Alab014915.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- Hr39
- Assembly
- GCA_014066325.1
- Location
- JACEOM010004376.1:1174388-1183030[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.49 6.1e+03 -2.7 3.4 77 107 38 68 18 104 0.52 2 5 0.34 4.2e+03 -2.2 4.6 59 163 287 391 269 411 0.56 3 5 3 3.7e+04 -6.9 10.1 70 151 426 507 398 533 0.52 4 5 1.3e-08 0.00017 22.2 0.1 1 41 599 636 599 674 0.73 5 5 6.2e-71 7.7e-67 227.5 0.4 187 408 758 974 650 974 0.91
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAAGGCCCAGGACCGGGTCCGGGACCGGGTTCCGGTTGGTGGCCAGCCTCGCAGTCTTGGAAGACGAACTCTTGCACCGCGACTTCCTCGTCCACCGGCTCCACCGCGTCAGACAACTCCGCCTCCGTCTCTGCCTCGTGCACCACCTCTACCTCCTCCCTGGCGACCACCACTTCGCCCACTTCGACCAGCTGCTGTTCCTCGACCCCCGGTGGATGTACGATCACTGCGGCTCGCTCCTCTGAGACTGGGAAAAATGTCTCTGTCACAACGATCAACGTACCACCTAATCAGGATATGCACGATggcaAGGGTATATGCAAATATCTCACCGGCCAGAATGGCGTGACAGTGTCCGTTGTTTCAAGCTGTGGATCCGTACTAGGCTGTGGAAATGCGAATATCGTATCTACTACGGGAATCGGTAACAACACCGGTACGCAGAGCATCGGTATTAATGTTCTAAGCCAGAATGCGGCAGATGAAGATGCTGAGGACAGCGATGTCGAGATAAGCAAAATTGACTTCCGAGGAGTAAATTTGCGCACGAAGAAGAAGCGAGATGTATCGATTAGTCAGAGTGGTGAAAAAATCGGTGACGGGGACGTAGAAGATGCAAATGGTTGTTATGATGGGAATGACGTTTCCCAACAACAACCGGAGAGACCTATGTCTTGGGAAGGAGAATTGTCTGATCAAGAAATGTCTTCCAATACAATTACAAATCAAgatACACATGAAGATACATCAATGGAAGGTGTTCAAATATGTGGTGCAAGTCCTGGACCTATAGAGCAGAAATTTCCTATAAAACCAGAACCAGATTTCCGATCCAGTCCTGGATTTACATTTGGTTCTTTTCATGATACAGGATTACCTCTGACTCATGGTCATCAaatacaacaacaacaacaacaacaacgcaACATTGAAAATCTTGAACAAACACAACAAAACGATTTGCCTCTTCTTGTAGGAAAATTACTTGGTGGTTATAATAGTTCAACTCCAAATCATAGTCCAGTTTTAAATCCTAGACATCATCTGACAAAGCATAGCCACACAAGATCGCagGTACCATCACCAGACTCGGCGATTCATTCCGCATACAGTGTATTTAGTTCACCAACGCAAAGTCCTCATGCAGCTCGTCATTCTGCTCTAGGAGCAGGAAGTCCAGTTCCATCTTCATCATTATCTTTGTCACGACATAGTTTCAATAATTCGACTTCTTCATTATCTTTATCGTTGTCACATTCGCTTTCAAGAAACAATTCAGATGCCTCAAGTAGCTGTTACAGCTATGGCTCTCTCAGTCCACCCACACATTCACCCGTCCAACAACCAAGACATCCGCAACATCATCAACATCAAGTTGCTCAAGGAAGTCCGCTTCATCTTCCGGCTACAGCCTCACCTGCCATTTCTCATCACTATTCTTCCTCTGCACCGGGTTCTGAATTGTCTCCTGAAGGACACGCTACTACAGACGATCAAGAAGATTGTCGAATACCATCAGCACCGTCTGGTATTTCAACTAggcaacaattaattaatagccCGTGTCCAATCTGCGGAGATAAGATTAGTGGTTTTCATTATGGAATCTTCTCATGCGAGTCATGCAAGGGATTTTTCAAACGCACCGTCCAAAACCGGAAAAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCCGTTACTGTCGCTACAAGGAAGAAATGCCCCGCCTGCCGATTTGATAAGTGCCTCAATATGgGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACCAGGGGTGGAAGAAGTACCTACCAATGTACGTACACTCTTCCAGCAAGCCTTGTTGGTAGTCCTGCAAGTAACATAGCTAACGATAAATTAGCTACTGGAGGTAATTGTAGTCCAGCTCCAACTGGTAATGAACATCACTATCCGGCAAGACATCATTCGAATCACTCTCATAAAATGCAAGTAGTACCACAACTTTTACAAGACATCATGGATGTAGAGCATTTATGGCATTACAATGATAATGATCGTATGACCGGAAGTGGAGGAATAAATACTACTAGAAATAATGATGCAATGTTATTGGGAGTTGGAAATGGTGGAGGAGCTGGAACAGGAAATGATACGAGttcaaatattgaatgttCTTCTAATGGAACCGCAGGAAACGGTAATCCCAATAACAGAAGAGATGAGAGATCATGTTCTAATGTTTCTAATGTCGGTAATGAACAACGAGCTACGTCCATTAGTAGCAGttctcaaattaataatacaaatggtAATTCAACTCAACATCCTGATTTCTTATCGAACCTCTGTAACATCGCTGACCATCGTCTCTATAAAATAGTGAAATGGTGTAAGAGTTTAcccttatttaaaaacatttcaattgATGATCAGATTTGTCTGTTAATTAATTCCTGGTGCGAGTTATTGCTGTTTTCATGTTGTTTTCGGAGCATGAGCACTCCTGGTGAAATTAGAGTATCTCTTGGCAAGTCGATTACATTAGAACAGGCTAGACAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAATAATTTGCGAAGACTTCGAGTAGATCAGTATGAATATGTGGCAATGaaggTAATAGTGTTATTGACCTCTGATACAAGTGAATTGAAGGAACCTGAAAAAGTTAGAGCATCTCAGGAGAAGGCTTTACAAGCATTACAACAATATACCATAGCAAGGTACCCAGAGATGCCTGCTAAATTTGGTGAATTACTATTGAGAATTCCAGATTTACAAAGAACATGCCAAGCAGGAAAAGAATTGTTAAGTGCGAAACGTGCTGAAGGAGAAGGTAGTtcgtttaatttgttaatggAATTGTTGAGAGGAGATCATTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGSGWWPASQSWKTNSCTATSSSTGSTASDNSASVSASCTTSTSSLATTTSPTSTSCCSSTPGGCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANIVSTTGIGNNTGTQSIGINVLSQNAADEDAEDSDVEISKIDFRGVNLRTKKKRDVSISQSGEKIGDGDVEDANGCYDGNDVSQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQICGASPGPIEQKFPIKPEPDFRSSPGFTFGSFHDTGLPLTHGHQIQQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAISHHYSSSAPGSELSPEGHATTDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPASNIANDKLATGGNCSPAPTGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGSGGINTTRNNDAMLLGVGNGGGAGTGNDTSSNIECSSNGTAGNGNPNNRRDERSCSNVSNVGNEQRATSISSSSQINNTNGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00141880;
- 80% Identity
- iTF_00141880;