Bign018473.1
Basic Information
- Insect
- Bombus ignitus
- Gene Symbol
- Hr39
- Assembly
- GCA_014825875.1
- Location
- CM026146.1:2144179-2159374[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6 1.9e+04 -5.1 5.1 123 153 41 71 21 100 0.48 2 5 1.5 1.1e+04 -4.3 7.0 75 163 311 398 248 425 0.58 3 5 3 2.2e+04 -11.0 17.4 45 150 394 513 369 539 0.50 4 5 1.6e-07 0.0012 18.7 0.1 1 19 606 624 606 629 0.95 5 5 3e-71 2.2e-67 228.6 0.2 89 408 665 983 625 983 0.74
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCTGGACCGGGCCCAGGGCCGGGTCCTGGTTGGTGGCCAACCTCACAGACCTGGAAGACGAACTCCTGCACCGCTGCCTCCTCGTCCACTTGTTCAACCGTTCCAGACAACTCCGCCTCCGTCTCTGCCTCTTGCACCACCTCTACGTCCTCCCTGGCGACCACCACATCGGCCACCTCATCGACCAGCTGCTGTTCCTCCACCCCTGGCGGTGGACCGTCCTGCACGATCACCGCGGCCCGCTCCTCCGAAACGGGAAAGAACGTTTCTGTCACGACGATCAATGTACCCCCTAATCAGGACATGCACGATGGCAAGGGTATATGCAAGTATCTTGGCGGCCAGAATGGCGTGACGGTATCGGTAGTGTCAAGCTGTGGCTCGATATTGGGATGTGGAAGCGCGAATGTTGTGTCTACCACGGGGATAGGCAGTAACACCGGCACACAGAGTATTGGCATCGGAGTGAACATCCTTGATCAGAGCACGGCGGATGATGACGCGGAGGATAGCGACGTTGAGATAAGCAAAATCGACTTCCGAGGGGTGAATTTGCGTACGAAGAAGAAGCGAGACGTGTCTGGTAGTCAGAGTCAAAGCGGGGAGAAAATCGGCGATGGAGAGGTCGAGGATGGAAACGGTTGTTACGATGGAAGCGACGCGTCTCAGCAACAACCGGAGAGGCCCATGTCTTGGGAGGGAGAGCTATCCGATCAAGAAATGTCTTCCAATACGATTACAAATCAAGATACACACGAGGACACGTCAATGGAGGGTGTTCAAGTATGTGGCGCGAGTCCCGGGCCAATGGAACATAAATTTCCCATAAAACCAGAGCCAGATTTTCAGTCCAACACAGGTTTCACATTTGGCTCTTTTCACGACACCGGATTACCTCTGAATCACGGCCAGCAAATACAACAACAGCAACAACAGCGCAACATTGAGAATCTTGAACAGACACAACAAAACGATTTGCCTCTTCTCGTAGGAAAATTACTTGGTGGTTACAATAGTTCGACTCCGAATCACAGTCCGGTGTTGAATCCTAGACACCATTTAACAAAGCATAGCCACACGAGATCGCAGGTGCCGTCACCGGACTCGGCCATTCATTCCGCATACAGCGTATTCAGCTCCCCGACGCAAAGTCCTCACGCAACTCGCCACTCCCCCCTGGGCGCGGCAAGTCCAGTTCCATCTTCGTCGCTATCCTTGTCGCGACACAGTTTCAACAATTCCACTTCCTCGTTGTCGCTCTCGTTGTCACACTCCCTCTCGAGAAACAATTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCACCCACACACTCGCCCGTCCAACAACCGAGACATCCGCAGCATCACCAGCATCAAGTTGCTCAAGGAAGCCCGCTTCATCTGCCAGCAACCGCTTCTCCCGCCATTACTCATCACTACACTTCCTCTGCACCGGGTTCTGAGCTATCTCCAGAAGGACACGCTGCTACAGACGATCAGGAGGACTGTAGAATACCCTCGGCACCGTCTGGTATATCCACGAGGCAGCAACTAATAAATACCCCGTGTCCAATTTGCGGCGACAAGATCAGTGGTTTTCATTATGGAATATTCTCGTGCGAGTCGTGCAAGGGATTTTTCAAACGCACCGTCCAGAATCGAAAGAATTATGTGTGCCTTAGAGGCGCGGGCTGTCCAGTCACCGTTGTTACCAGGAAAAAATGCCCCGCCTGCAGATTCGACAAGTGCCTCAGTATGGGTATGAAGCTCGAGGCGATTAGAGAGGATCGCACCAGGGGTGGCAGAAGTACCTATCAGTGTACATATACTTTTCCGCCAAATTTCGTCGGTAGTCCTGCAAATAACATGTCCAGCGACAAATTAGCTACCGGAGGAAATTGTAGTCCAGCTCCGGCTGGTAACGAACATCACTATCCGGCAAGGCACCATTCGAATCACTCCCATAAGATGCAAGTGGTACCGCAACTTTTACAGGATATCATGGACGTAGAGCACTTGTGGCATTACAATGATAACGATCGTATGACCGGGATTCAAAACGCAGGAACGAATCTTACTAGAAACAACGATTCGATGTTATTGAGTGTCAGAAGCAACGGAGGATCTGGAATAGAGAACGACACAGGTTCGGGTATTGAGTGTTCCTCCAATAGAACTACAGGAAATGGCAATCCTAGTAATAGAAGAGATAACAGATCATGCTCCAATGTTTCTAACGTTGGTAACGAACAACACGCTGCATCCGTTGGTAGCAGTTCTCAAATCAACAATACGAATTGTAATCCGACTCAACATCCTGATTTTTTGTCGAACCTCTGCAATATCGCTGATCATCGACTCTACAAAATAGTGAAGTGGTGCAAGAGTTTGCCGTTATTTAAAAACATTTCGATCGATGATCAGATCTGTCTGTTGATTAATTCTTGGTGCGAGCTACTGCTTTTCTCGTGCTGCTTTCGCAGTATGAGCACTCCCGGTGAAATTAGAGTGTCTCTCGGTAAGTCGATTACACTGGAACAAGCTAGGCAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAACAATTTGAGAAGGCTCCGAGTAGATCAGTACGAATACGTGGCGATGAAGGTAATAGTACTGTTGACCTCTGATACGAGTGAACTGAAAGAACCTGAAAAAGTTAGAGCATCTCAGGAAAAGGCTTTACAAGCATTGCAACAATATACTATCGCAAGGTACCCAGAAATGCCTGCTAAGTTTGGCGAATTATTATTGAGAATTCCAGACTTACAAAGAACATGCCAGGCAGGAAAGGAATTATTAAGCGCTAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTGATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPTSQTWKTNSCTAASSSTCSTVPDNSASVSASCTTSTSSLATTTSATSSTSCCSSTPGGGPSCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLGGQNGVTVSVVSSCGSILGCGSANVVSTTGIGSNTGTQSIGIGVNILDQSTADDDAEDSDVEISKIDFRGVNLRTKKKRDVSGSQSQSGEKIGDGEVEDGNGCYDGSDASQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQVCGASPGPMEHKFPIKPEPDFQSNTGFTFGSFHDTGLPLNHGQQIQQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHATRHSPLGAASPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAITHHYTSSAPGSELSPEGHAATDDQEDCRIPSAPSGISTRQQLINTPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVVTRKKCPACRFDKCLSMGMKLEAIREDRTRGGRSTYQCTYTFPPNFVGSPANNMSSDKLATGGNCSPAPAGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGIQNAGTNLTRNNDSMLLSVRSNGGSGIENDTGSGIECSSNRTTGNGNPSNRRDNRSCSNVSNVGNEQHAASVGSSSQINNTNCNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00228733;
- 80% Identity
- iTF_00221321;