Acer011348.1
Basic Information
- Insect
- Apis cerana
- Gene Symbol
- Hr39
- Assembly
- GCA_029169275.1
- Location
- CM054906.1:16206873-16212238[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.74 5.1e+03 -2.9 3.7 77 107 38 68 20 103 0.50 2 5 0.37 2.5e+03 -1.9 3.6 54 163 283 390 271 408 0.62 3 5 4 2.8e+04 -6.6 10.5 69 160 424 515 398 532 0.55 4 5 1.4e-08 9.9e-05 22.5 0.0 1 43 598 637 598 672 0.72 5 5 9.5e-71 6.5e-67 227.3 0.2 185 408 755 973 643 973 0.87
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAAGGCCCAGGACCGGGTCCGGGACCGGGTCCCGGTTGGTGGCCAGCCTCGCAGTCTTGGAAGACGAACTCTTGCACCGCGACTTCCTCGTCCACCGGCTCCACCGCATCAGACAACTCCGCCTCCGTCTCTGCCTCGTGCACTACCTCTACCTCCTCCCTGGCGACCACCACTTCGCCCACCTCGACCAGCTGTTCCTCGACCCCCGGTGGATGCACGATCACTGCAGCTCGCTCCTCCGAGACGGGGAAAAATGTCTCTGTCACAACGATCAACGTACCACCCAATCAGGATATGCACgatggcaaGGGTATATGCAAATATCTCACCGGCCAGAATGGCGTGACAGTGTCCGTAGTTTCAAGCTGTGGATCCGTGCTAGGCTGTGGAAATGCGAACATTGTGTCTACTACGGGAATCGGTAACAACGCCGGTACGCAAAGCATCGGTATCggtattaatgttataaaccAGAATACAGCAGATGAAGATGCTGAGGATAGCGATGTCGAGATAAGCAAAATTGACTTTCGAGGGGTAAATTTGCGCACGAAGAAGAAGCGAGATGTGTCGATTAGTCAGAGTGGTGAAAAAATCGGTGACGGGGACGTAGAAGATGCAAATGGTTGTTATGATGGGAACGACGTTTCCCAACAACAACCAGAGAGACCTATGTCATGGGAAGGAGAATTATCCGACCAAGAAATGTCTTCCAATACAATTACAAATCAAgatACACATGAAGATACATCAATGGAAGGTGTTCAAATATGTGGTGCGAGTCCTGGACCTATAGAGCAGAAATTTCCTATAAAACCAGAACCAGATTTCCGATCCAGTCCTGGATTTACATTTGGTTCTTTTCATGATACAGGATTACCTCTAACTCATGGTCATCAaatacaacaacaacaacaacgcaACATTGAAAATCTTGAACAAACACAACAAAACGATTTGCCTCTTCTTGTAGGAAAATTACTTGGTGGTTATAATAGCTCAACTCCAAATCATAGTCCAGTTTTAAATCCTAGACATCATCTAACAAAGCATAGCCACACAAGATCACagGTACCATCACCAGACTCGGCAATTCATTCCGCATACAGTGTATTTAGTTCACCAACGCAAAGTCCTCATGCAGCTCGTCATTCTGCCCTAGGGGCAGGAAGTCCAGTTCCATCTTCATCATTATCTTTGTCGCGACATAGTTTCAACAATTCGACTTCTTCATTATCTTTATCGTTGTCACATTCGCTTTCGAGAAACAATTCAGATGCCTCAAGTAGCTGTTACAGCTATGGCTCTCTCAGTCCACCCACGCATTCACCCGTCCAGCAACCAAGACATCCGCAACATCATCAACATCAAGTTGCTCAAGGAAGTCCACTTCATCTTCCGGCTACAGCTTCACCTGCCATTTCTCATCACTATTCTTCCTCTGCACCGGGTTCTGAATTGTCTCCTGAAGGACACGTTGCTACAGACGATCAAGAAGATTGTCGAATACCGTCAGCACCGTCTGGTATTTCAACTAggcaacaattaattaatagccCATGTCCAATCTGCGGAGATAAGATTAGTGGTTTTCATTATGGAATCTTCTCATGCGAATCGTGCAAGGGATTTTTCAAACGCACCGTCCAAAATCGGAAAAATTATGTGTGCCTTAGAGGCGCGGGCTGCCCCGTTACTGTCGCTACAAGGAAGAAATGCCCCGCCTGCCGATTTGATAAGTGCCTCAATATGgGTATGAAGCTCGAGGCGATTAGGGAGGATCGCACTAGGGGTGGAAGAAGTACCTATCAATGTACATACACTCTTCCAGCAAGCCTTGTTGGTAGTCCTGCAAGTAACATAGCTAGCGATAAATTAGCTACTGGAGGAAATTGTAGTCCAGCTCCAACTGGTAATGAACATCACTATCCGGCAAGACATCATTCAAATCACTCTCATAAAATGCAAGTAGTACCACAACTTCTACAAGACATCATGGATGTGGAGCATTTATGGCATTACAATGATAATGATCGTATGACCGGAAGTGGAGGAATAAATACTACTAGAAATAATGATGCAATGTTATTGGGAGTTGGAAGTAGTGGAGGAGCTGGAACAGGAAATGATACGAGttcaaatattgaatgttCGTCCAATGGAACCGCAGGAAATGGTAATCCCAATAACAGAAGAGATGAGAGATCATGTTCTAATGTTTCTAACGTCGGTAATGAACAACGAGCTACGCCCATTAGTAGCAGttctcaaattaataatacaaatggtAATTCAACTCAACATCCTGATTTCTTATCGAACCTCTGCAACATCGCTGATCATCGTCTCTATAAAATAGTGAAATGGTGTAAGAGTTTAccgttatttaaaaacatttcaattgATGATCAGATTTGTCTGTTAATTAATTCCTGGTGCGAGTTATTGCTCTTTTCATGTTGTTTTCGGAGCATGAGCACTCCTGGTGAAATTAGAGTATCTCTCGGCAAGTCGATTACATTAGAACAGGCTAGACAGCTTGGCTTAGCGACCTGCATCGAGAGGATGCTTGCATTTACTAATAATTTGCGAAGACTTCGAGTAGATCAGTATGAATATGTGGCAATGAaggTAATAGTGTTATTGACCTCTGATACAAGTGAATTGAAGGAACCTGAAAAAGTTAGAGCATCTCAGGAGAAGGCTTTACAAGCATTACAACAATATACCATAGCAAGGTACCCAGAGATGCCTGCCAAATTTGgtgaattattattgagaaTTCCAGATTTACAAAGAACATGCCAAGCAGGAAAAGAATTGTTAAGTGCGAAACGTGCTGAAGGAGAAGGTAGCtcgtttaatttgttaatggAATTATTAAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPASQSWKTNSCTATSSSTGSTASDNSASVSASCTTSTSSLATTTSPTSTSCSSTPGGCTITAARSSETGKNVSVTTINVPPNQDMHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANIVSTTGIGNNAGTQSIGIGINVINQNTADEDAEDSDVEISKIDFRGVNLRTKKKRDVSISQSGEKIGDGDVEDANGCYDGNDVSQQQPERPMSWEGELSDQEMSSNTITNQDTHEDTSMEGVQICGASPGPIEQKFPIKPEPDFRSSPGFTFGSFHDTGLPLTHGHQIQQQQQRNIENLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASPAISHHYSSSAPGSELSPEGHVATDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPASNIASDKLATGGNCSPAPTGNEHHYPARHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMTGSGGINTTRNNDAMLLGVGSSGGAGTGNDTSSNIECSSNGTAGNGNPNNRRDERSCSNVSNVGNEQRATPISSSSQINNTNGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733987;
- 90% Identity
- iTF_00141880;
- 80% Identity
- iTF_00140645;