Lleu015366.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum leucozonium
Gene Symbol
Hr39
Assembly
GCA_028454225.1
Location
CM052217.1:10415123-10421171[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 2 1.8e+04 -6.8 6.8 140 160 38 58 22 106 0.48
2 6 2 1.8e+04 -5.6 12.7 43 157 314 421 250 440 0.54
3 6 1.5 1.3e+04 -4.9 10.8 70 162 439 531 416 546 0.59
4 6 4e-08 0.00036 20.1 0.0 1 21 612 632 612 636 0.92
5 6 0.36 3.3e+03 -2.9 0.0 88 113 670 695 658 721 0.66
6 6 2e-69 1.8e-65 222.0 0.0 197 408 781 988 756 988 0.94

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCGGCGAGGGCCCAGGGCCGGGACCGGGTCCAGGTCCTGGCTGGTGGCCCACCTCGCAGTCCTGGAAGACGAGCTCCGCTGCGTCCGCGTCCGCGTCTGCTTCCTCGTCCGCCGGCTCGACCGCTTCGGATAGCTCCGCCTCCGTCTCTGCGCCCTGCACCGCCTCTACCTCCTCCCTCGCAACTACTACTTCGGCTACCCCCTCGTCCAGCTGCTGTTCCTCCACTCCCGGCGGACACTCGTGCACCATCACCGCCGCACGCACCTCCGAGACTGGCAAGAACGTCTCCGTTACAACGATCAACGTACCTCCCAATCAAGACTTACACGATGGGAAAGGAATCTGCAAGTACCTCACCGGTCAGAACGGCGTGACAGTGTCAGTAGTTTCCTCCTGCGGGTCCGTTCTTGGATGCGGGAACGCGAACGTCGTGTCGACGTCGGGAATTGGGACAGGCACTGGCGCGCATAGCATAGGCATCGGGATTGGAGTCGGTGTGCTCGGTCAGAACGCCGCCGAGAACGACGCCGAGGATAGCGACGGCGAAATAAGCAAGATCGACTTCCGAGGCGTGAATCTGCGCACGAAGAAGAAGCGGGATGTGCCCGGGAACGGTGAGAAAATCGGCGACGGCGACGTCGACGACGGGAACGGCTGCTACGACGGAAACGACGTCTCGCAGCAGCAGCCTGAGAGGCCCATGTCGTGGGAAGGTGAATTGTCCGATCAAGAAATGTCTTCCAATACTATCACGAATCAGGACACGCACGAGGAGACGTCGATGGAGGGTGTCCAGGTTTGCGGTTCGAGTCCCGGGCCCATGGAGCACAAATTCCCCATAAAACCGGAGCCAGACTTCCGGTCCAGTCCGGGATTCACGTTGGGTTCCTTCCACGACGCAGCATCTCTGAGCCACGGCCAGCAGATGCAACAGCAACAACAGCAGCAGCAACAGCAACAACAGCGGAACATAGAGAACATCGAGCAGACACAGCAGAGCGATTTGCCGCTTCTCGTGGGGAAACTGCTGGGCGGTTACAACAGCTCCACGCCGAATCACAGTCCCGTGTTGAACCCGAGACACCACCTGACCAAGCACAGCCACACGAGATCTCAGGTGCCGTCGCCGGATTCCGCGATTCACTCCGCGTACAGCGTGTTCAGCTCGCCGACGCAGAGCCCGCACGCAGCCCGACACTCCGCCCTGGGAGCTGGGAGTCCAGTCCCGTCGTCGTCGCTGTCCCTCTCCCGGCACAGCTTCAACAACTCGACCTCCTCGTTGTCGTTGTCGCTGTCCCACTCGCTCTCGAGAAACAACTCGGACGCCTCGAGCAGCTGCTACAGCTACGGCTCTCTCAGCCCGCCCACGCACTCTCCCGTCCAACAACCGAGGCATCCGCAGCATCATCAGCACCAGGTTGCTCAAGGAAGTCCGCTCCACTTGCCGGCCACGGCCTCGTCCAGCGTCCCCCATCACTATTCCTCATCCGTGCCCGGCTCCGAACTTTCTCCCGAAGCACACCCCACCGGAGACGACCAGGAAGACTGTCGAATACCCTCCGCTCCATCTGGCATCTCCACCAGACAACAGTTGATCAACAGTCCCtgtccaatatgcggagacaagatcagcggcttccactatgggatattctcctgcgagtcgtgcaagggattcttcaaacgcaccgtccagaaccggaagaattatgtgtgccttaggggcgcgggctgcccggtcaccgtcgccaccaggaaaaagtgtccggcatgtcggttcgacaaatgtctcaatatggGTATGAAACTCGAAGCAATTAGAGAGGATCGAACAAGAGGCGGAAGAAGCACTTATCAATGTACCTACACTCTGCCAGCGAATTTGGTTGGTAGTCCTGCCGGAGGCATGACTGGCGACAAACTAGGGGCTGGCGGGAACTGTAGTCCAGCTCCAGCTGGTAGCGAGCACCATTATTCTGTTAGGCATCATTCGAATCATTCGCATAAGATGCAAGTAGTGCCGCAGCTTCTGCAAGATATCATGGACGTGGAGCATTTGTGGCACTACAACGACAACGATCGAATGTCTGGTGTACAGCCAGGGGGTGGTGGAAGTGTTTCGAGAAACAACGATGCTATGCTGCTGGGAGGCGTGGGATCTGGAACGGGGAACGATGCTGGGCCAGGAGTGGAATGTTCTTCGAATGGGACCGCGGGGAATGGAAATCTAAATAACAGAAGAGATGGTAGATCGTGTCCCAATATTTCTAGTGTCGGCAACGACCAACGGGCACCGCCTGTCCACAGCAATTCTCAGTTAGGGAACAACACAAATGGCAATCCTACTCAGCATCCCGATTTCCTCTCGAACCTTTGTAATATCGCGGATCATCGACTCTACAAGATAGTGAAGTGGTGTAAAAGTCTGCCGTTGTTCAAGAACATCTCGATCGACGACCAGATTTGCCTGTTGATCAACTCCTGGTGCGAGCTACTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACGCCCGGTGAAATCAGAGTGTCTCTCGGCAAGTCGATTACATTAGAGCAAGCGAGGCAACTCGGCTTGGCGACCTGTATCGAGAGGATGCTCGCATTTACCAATAATCTGAGAAGGCTCAGAGTGGATCAGTACGAATACGTTGGGATGAAGGTGATAGTGCTGTTAACCTCCGATACGAGCGAACTGAAGGAACCAGAGAAAGTGAGGGCATCTCAGGAGAAGGCTCTTCAAGCGTTGCAACAGTACACCATAGCAAGGTACCCGGAGATGCCAGCTAAGTTTGGCGAATTGTTGCTGAGAATTCCGGACTTACAAAGGACGTGTCAGGCAGGGAAGGAATTGTTAAGCGCGAAACGTGCGGAAGGAGAAGGCAGCTCGTTCAACTTGTTGATGGAATTGTTGAGAGGAGATCATTGA
Protein Sequence
MSEQNGPGEGPGPGPGPGPGWWPTSQSWKTSSAASASASASSSAGSTASDSSASVSAPCTASTSSLATTTSATPSSSCCSSTPGGHSCTITAARTSETGKNVSVTTINVPPNQDLHDGKGICKYLTGQNGVTVSVVSSCGSVLGCGNANVVSTSGIGTGTGAHSIGIGIGVGVLGQNAAENDAEDSDGEISKIDFRGVNLRTKKKRDVPGNGEKIGDGDVDDGNGCYDGNDVSQQQPERPMSWEGELSDQEMSSNTITNQDTHEETSMEGVQVCGSSPGPMEHKFPIKPEPDFRSSPGFTLGSFHDAASLSHGQQMQQQQQQQQQQQQRNIENIEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATASSSVPHHYSSSVPGSELSPEAHPTGDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGDKLGAGGNCSPAPAGSEHHYSVRHHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGVQPGGGGSVSRNNDAMLLGGVGSGTGNDAGPGVECSSNGTAGNGNLNNRRDGRSCPNISSVGNDQRAPPVHSNSQLGNNTNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVGMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733987;
90% Identity
iTF_00763268;
80% Identity
iTF_00862639;