Nurt004194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphalis urticae
Gene Symbol
bab1
Assembly
GCA_905147175.1
Location
LR989982.1:3606696-3617695[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 8.1e-18 1.6e-14 53.9 0.0 1 43 61 104 61 106 0.95
2 3 4.8 9.5e+03 -3.0 0.0 12 22 167 176 166 176 0.71
3 3 3.3 6.7e+03 -2.5 2.0 6 15 196 205 192 206 0.82

Sequence Information

Coding Sequence
ATGCATATGTATGCAAAGTTGCTTGAGAACTCTCACGCTTGGCTCGGCGCCTCTACATCTTCGATTGCAGCAGATAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACGAATCAGAGCCTTGTCCATAACTTACGATTCCGCGAGCGCGGTCCACTCAAATCTTGGCGCCCCGAGACCATGGCTGAAGCTATATTCTCCGTACTGAAGGAAGGACTGTCCCTTTCTCAAGCTGCAAGGAAATACGATATACCATACCCGACGTTCGTTCTCTACGCCAACCGAGTCCATAACATGCTGGGACCCAGCGCTGATGGCGGTGCAGATTTGAGACCAAAAGGTCGCGGAAGGCCTCAGCGCATCCTGCTGGGAGTATGGCCTGACGAGCACATCCGCGGCGTGATTCGTGCCGTGGTCTTCAGAGACTCGCACGCTCCGCACTCCACCCATCACATCAAGGAGGAGGTGCTCCCCGTCTATCCTGCCATCACGGATGGTATGAGCGTGCAGAACGCGTACCCTGTTGCATGCGGCAACGGGCGCGAAGGCGGCGTATCGCCAAATGCAGCTGCCGCTGCCGCCGTGGCTGCCGTCGCTCATGGTCTTCGTCGTCAAATGTGCAACATGGTGGTTGCCGCTCAACGACCACCCGATCACCCGCCACACCTCGGACTGCCCCCGCTGCCACTTCAGTCACCACGTCTACCTTCGCCGCTCTCTGCCGGACTGGAATCACCACTCTGCTCACCGCCGCCTCCTGGTCACGCTCTGGAACCACCGAAGCCTGCGGATCCTTTCCGCCCCTTTGCTTCACCCCGTCCCGACAGCCGCTATGGAGAACGTGACGTCGTCGCTGAGATAACTGACATGGGCCCGCCTAAGACTCCGGTTTCGATCGCTAAGAACGGCAAGGATTTGTCGACGCCGCTTCCAGTCAAGATGGAGCCGCCTCCGGCAGAGGCACGTGCGGAGAACATCTGA
Protein Sequence
MHMYAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHAPHSTHHIKEEVLPVYPAITDGMSVQNAYPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVAEITDMGPPKTPVSIAKNGKDLSTPLPVKMEPPPAEARAENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01281233;
90% Identity
iTF_00695398; iTF_01078126; iTF_01078127; iTF_01078997; iTF_01507094; iTF_01507990; iTF_00984952; iTF_00824633; iTF_00985913; iTF_01506265; iTF_00007937; iTF_00247970; iTF_00077411; iTF_01403363; iTF_00275177; iTF_01091619; iTF_00954337; iTF_00953440; iTF_01018504; iTF_00642261; iTF_00213348; iTF_00410212; iTF_00009924; iTF_00289551; iTF_00156178; iTF_00008821; iTF_01464088; iTF_01134713; iTF_00342138; iTF_00325307; iTF_00155231; iTF_00658282; iTF_00659384; iTF_01245860; iTF_01282150; iTF_00074404; iTF_00075399; iTF_01280110; iTF_00076392; iTF_01071564; iTF_01125391; iTF_01124530; iTF_00347411; iTF_00960860; iTF_00683238; iTF_00284455; iTF_00207815; iTF_00208774; iTF_01401202; iTF_00277287; iTF_01217415; iTF_01437895; iTF_00166852; iTF_00795622; iTF_01082360; iTF_00970329; iTF_00971155; iTF_00751944; iTF_01281233; iTF_00288778; iTF_00177995; iTF_00710123; iTF_00114863; iTF_00771023; iTF_00357347; iTF_01203174; iTF_00430567; iTF_01204809; iTF_00358446; iTF_01561944; iTF_01205626; iTF_01203967; iTF_00942731; iTF_00462316; iTF_01135686; iTF_00680445; iTF_00878796; iTF_00006221; iTF_01081515; iTF_00287981; iTF_00673414; iTF_01359639; iTF_01133645; iTF_00772801; iTF_00657067; iTF_01463181; iTF_00656014; iTF_01072368; iTF_00654164; iTF_00411349; iTF_00871221; iTF_00149302; iTF_00148409; iTF_00448069; iTF_00382494; iTF_00035570; iTF_00647919; iTF_00832834; iTF_00736539; iTF_00352976; iTF_00354001; iTF_00842577; iTF_00959340; iTF_00461481; iTF_00418892; iTF_01033647; iTF_00419696; iTF_00958608; iTF_00420468; iTF_01034459; iTF_00421276; iTF_00960096; iTF_01502897; iTF_00457170; iTF_00212353; iTF_00144485; iTF_00457937; iTF_00255737; iTF_00405843; iTF_00722963; iTF_00159750; iTF_00777331; iTF_00781760; iTF_00778692; iTF_00782565; iTF_00777929; iTF_00775953; iTF_00775188; iTF_00776667; iTF_00780189; iTF_00774432; iTF_00925651; iTF_00687816; iTF_00786684; iTF_01115636; iTF_01494984; iTF_00409206; iTF_00896697; iTF_00806615; iTF_00164248; iTF_00934658; iTF_01248011; iTF_00403692; iTF_00933652; iTF_00323416; iTF_00356057; iTF_00355013; iTF_00364839; iTF_01334681; iTF_01178330; iTF_00621148; iTF_00247102; iTF_01181822; iTF_00195103; iTF_01079819; iTF_00796448;
80% Identity
iTF_01507094;