Pman022812.2
Basic Information
- Insect
- Pieris mannii
- Gene Symbol
- bab1
- Assembly
- GCA_029001895.1
- Location
- CM054852.1:7517331-7523146[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-17 1.7e-14 53.8 0.0 1 43 80 123 80 125 0.95 2 2 6.6 7e+03 -2.6 2.0 6 15 216 225 212 226 0.82
Sequence Information
- Coding Sequence
- ATGAGTAAGCATTGCTTAGATCGGTCCGTCGGAAGAACGGTCTCTTTATACATTTCATTAGGGTCAAGGGCGAAGATCCTTGAGAACTCCCATGCTTGGCTTGGCGCTTCTACATCGTCACTCGCAGtaGATAGCTACCAGTACCAGCTCCAATCAATGTGGCAGAAGTGTTGGAACACCAATCAGAGCCTGGTGCACAACTTACGATTTCGCGAACGCGGCCCACTAAAATCCTGGAGGCCAGAAACAATGGCAGAAGCAATCTTCTCTGTACTGAAGGAGGGGCTTTCTCTGTCACAAGCTGCAAGGAAATACGATATACCATATCCCACATTTGTTCTCTATGCAAATCGGGTCCACAATATGCTGGGACCCAGTGCTGATGGTGGTACAGATTTGAGACCAAAAGGTCGTGGTCGGCCGCAGCGCATCTTGCTAGGAGTGTGGCCCGATGAACACATTCGTGGCGTGATCCGCGCCGTAGTTTTCCGGGATTCACACGCTTCCCACACCGCTCATCACATCAAGGAAGAAGTGTTGCCCGTCTATCCTCAAATCACGGATGGTATGACTGTGGGTCAAAGTCCATACCCGGTACCATGCGGCAACGGGCGCGAAGGAGGAGTGTCACCAAATGCTGCCGCAGCTGCTGCTGTGGCTGCAGTGGCTCATGGTCTACGACGTCAGATGTGCAACATGGTAGTGGCCGCACAAAGGCCGCCCGACCATCCGCCACATCTAGGCCTACCCCCTCTACCGCTGCAGTCTCCACGCTTGCCTTCACCGCTGTCCACCGGTTTAGAATCTCCTCTCTGCTCACCACCTCCTCCTGGGCACGCACTCGAACCTCCAAAGCCAGCTGACCCTTTCCGCCCATTCGTATCGCCTAGACCAGACAGCCGTTATGGAGAACGAGATGTGGTTGCTGATATCACCGAAATGGGCCCACCGAAGACACCGGTAACCGTGGCAAAGAATGGCAAAGACCTGTCGTCCCCGCTGCCGGTGAAAATGGAGGCGCCCCAGGCAGATGGGCGTGCTGAGAACATCTGA
- Protein Sequence
- MSKHCLDRSVGRTVSLYISLGSRAKILENSHAWLGASTSSLAVDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHASHTAHHIKEEVLPVYPQITDGMTVGQSPYPVPCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSTGLESPLCSPPPPGHALEPPKPADPFRPFVSPRPDSRYGERDVVADITEMGPPKTPVTVAKNGKDLSSPLPVKMEAPQADGRAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -