Lphl014606.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- bab1
- Assembly
- GCA_905333005.1
- Location
- HG995168.1:1065491-1078809[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 1.5e-14 53.9 0.0 1 43 62 105 62 107 0.95 2 2 4.8 6.3e+03 -2.5 2.0 6 15 197 206 193 207 0.82
Sequence Information
- Coding Sequence
- ATGCGTAGGCTCTTCGCTAAATTACTGGAGAACTCGCACGCCTGGCTTGGTGCTTCCACCTCATCTATTGCAGCAGATAGCTACCAATACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAATACGAACCAGAGCCTCGTCCACAACCTACGATTCCGCGAACGCGGCCCGCTGAAATCATGGCGACCAGAAACAATGGCTGAAGCTATATTTTCCGTGCTGAAAGAAGGACTGTCGCTGTCGCAAGCTGCAAGAAAATACGATATACCATACCCGACCTTTGTGCTGTACGCCAACCGTGTACACAACATGCTCGGCCCCAGCGCTGATGGTGGTGCAGATTTGAGACCCAAAGGGCGCGGACGTCCGCAGCGCATCCTCCTAGGAGTGTGGCCCGACGAGCACATCCGCGGGGTGATCCGTGCCGTGGTCTTTCGTGACTCCCATACCCCGCACACCACCCACCACATCAAGGAGGAGGTCCTACCAGTCTATCCTCCAATAACGGATGGCATCAACGTGCAGAATACATACGCCGTGGCCTGTGGAAACGGGCGCGAGGGTGGCGTGTCCCCGAACGCCGCCGCTGCCGCCGCAGTGGCCGCGGTTGCGCATGGCTTGCGTCGCCAGATGTGCAACATGGTTGTGGCCGCGCAGAGGCCGCCCGATCACCCCCCGCACCTCGGCCTGCCACCCCTGCCGCTCCAGTCCCCACGCCTCTCCTCCCCGCTCTCGGCTGGACTCGAATCCCCGCTCTGCTCGCCGCCACCGCCAGGTCACGCTCTCGAACCCCCGAAACCGAATGACCCGTTCCGCCCGTTCGCCTCGCCCCGCCCGGACAGCCGCTACGGAGAACGCGATGTGGTATCCGACATCACAGACATGGGACCGCCCAAGACGCCAGTATCGATCGCTAAGAACGGCAAGGATCTGTCGACCCCGGTGCCGGTGAAGATCGAGCCGCCGCCGGCGGAGACGCGCGCTGAGAACATCTGA
- Protein Sequence
- MRRLFAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHTPHTTHHIKEEVLPVYPPITDGINVQNTYAVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLSSPLSAGLESPLCSPPPPGHALEPPKPNDPFRPFASPRPDSRYGERDVVSDITDMGPPKTPVSIAKNGKDLSTPVPVKIEPPPAETRAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079819;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -