Hcha020767.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- bab1
- Assembly
- GCA_030704555.1
- Location
- CM060829.1:8090042-8100497[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 2e-14 53.6 0.0 1 43 120 163 120 165 0.95 2 2 4.7 7.7e+03 -2.7 2.0 6 15 255 264 251 265 0.82
Sequence Information
- Coding Sequence
- ATGAAAAGATTAGATTCACTAATTTACACCTCCCGATCTCGAACAGGAAGTTTACGATCGGACATTTTATCTAATGCTACCGTGCCCCGCCTATCGCAGCCAGAAGACGCGCGACGCCGCGCCTCGCCGCTAGTCCGCCGGCGCACGTGTCCGAGTGCCGGCCGCGCGACTCGCAACGCGCCCGCTATTGCAAAATTGCTTGAGAACTCTCATGCATGGCTCGGAGCCTCCACATCTTCGATCGCAGcAGATAGCTACCAGTACCAGCTGCAATCCATGTGGCAAAAGTGCTGGAATACCAACCAGAGTCTAGTGCACAATCTGCGGTTCCGCGAACGCGGCCCTCTCAAATCCTGGCGCCCTGAAACCATGGCCGAGGCTATATTCTCCGTTCTTAAAGAGGGGCTCTCTCTCTCCCAAGCTGCCAGAAAATACGACATACCGTACCCGACGTTCGTGCTGTACGCTAACAGAGTCCACAACATGCTGGGTCCCAGCAGTGACGGAGGAGCAGATTTGAGACCAAAAGGTCGCGGACGACCGCAACGCATCCTTCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGCGACTCGCACACGCCGCACGCCGCCCACCACATCAAGGAGGAGGTGCTCCCCGTCTATCCTCCCATCACGGACGGCATGAGCGTGCAGAACGCATACCCCGTGGGGTGCGGCAACGGGCGCGAGGGCGGGGTGTCGCCcaacgccgccgccgccgccgccgtggCTGCCGTCGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGTGGCCGCGCAGCGCCCGCCCGACCACCCGCCGCACCTGGGCCTGCCGCCGCTGCCGCTGCAGTCGCCGCGCCTGCCCTCCCCGCTCTCTGCCGGCCTGGAGTCCCCGCTGTGCTCGCCGCCGCCGCCGGGCCACGCCCTCGAGCCGCCCAAGCCCGCTGACCCCTTCCGACCTTTCGCTTCGCCTCGACCGGACAGTCGTTATGGAGAACGTGATGTGGTTTCCGAGATGACCGAAATGGGCCCGCCTAAGACACCGGTATCGATCGCCAAGAATGGCAAGGACCTGACGACTCCGCTGCCGCTGCCGCTGCCGGTGAAGATGGAGCTGCCACCGGCAGAGGCTCGCGCTGAGAACATTTGA
- Protein Sequence
- MKRLDSLIYTSRSRTGSLRSDILSNATVPRLSQPEDARRRASPLVRRRTCPSAGRATRNAPAIAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHTPHAAHHIKEEVLPVYPPITDGMSVQNAYPVGCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVSEMTEMGPPKTPVSIAKNGKDLTTPLPLPLPVKMELPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -