Cpin000281.2
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- bab1
- Assembly
- GCA_963556745.1
- Location
- OY750758.1:1188564-1194507[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-17 1.8e-14 53.6 0.0 1 43 112 155 112 157 0.95 2 2 9.6 7.2e+03 -2.7 2.0 6 15 247 256 243 257 0.82
Sequence Information
- Coding Sequence
- ATGAGCCAAAAAGTAGCCAAGAAAAATGAGCCAGTGGAACAAAACGAACCCTCGGACGAGGCGCGAAATTTGCGTCCGAGCGAGCCTCAGCCGTCGGAACCGAACCTCGCGATAAGCGACGGggaatttgaaaattgttctGTTATCGACGTGAATATGCTCTCTGATGATACTGGTGTTGATATGGAGTCAGTTGATCCGGTGGTTGCTAACAATGGGGCAACAGACAGCTACCAATACCAGCTTCAGTCAATGTGGCAGAAATGCTGGAACACCAACCAGAGCCTCGTGCACAACCTCCGATTCCGCGAGCGCGGGCCGCTGAAGTCCTGGCGGCCGGAAACCATGGCTGAAGCCATCTTCTCCGTGCTGAAGGAGGGCCTGTCTCTCTCTCAAGCTGCTAGGAAGTACGACATACCGTACCCCACCTTCGTACTGTACGCCAACCGAGTCCACAACATGCTCGGCCCAAGCGCCGACGGCGGTGCCGATCTAAGGCCAAAGGGACGCGGGCGGCCACAGCGCATCCTCCTTGGCGTGTGGCCCGACGAGCACATCCGCGGCGTTATCCGTGCCGTCGTCTTCCGTGACACCCACGCCTCGCACACCGCTCATCACATCAAGGAAGAGGTCCTACCCTACCCCTCTATCACGGATGGGATCACCGTGCCGAACGCGTATGGCAGCGCGGCATGTGGCAACGGTCGCGACGGTGGTGTATCGCCGAAtgcagccgccgccgccgccgtggcTGCTGTCGCCCACGGCCTACGCCGTCAGATGTGCAATATGGTTGTGGCCGCACAGCGCCCTCCAGACCATCCACCGCACCTCGGGTTGCCGCCTCTGCCACTGCAGTCCCCACGGCTACCGTCACCGCTGTCCGCCGGGCTCGAGTCGCCTCTCTGCTCGCCGCCTCCCCCCGGCCACGCTCTCGAACCGCCGAAACCCGCCGACCCGTTCCGCCCATTCGCGTCGCCTCGCCCGGATAGCCGCTACGGCGAACGCGACGTCGTCGTCACGGAGATGACTGAAATGGGCCCGCCAAAGACTCCGGTGTCGGGGACTAAGAACGGCAAGGATCTTTCGACGCCGGTGCCGATGAAGATGGAGCCGCCGCCTGCGGAGGCGCGCGCGGAGAACATCTGA
- Protein Sequence
- MSQKVAKKNEPVEQNEPSDEARNLRPSEPQPSEPNLAISDGEFENCSVIDVNMLSDDTGVDMESVDPVVANNGATDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHASHTAHHIKEEVLPYPSITDGITVPNAYGSAACGNGRDGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVVTEMTEMGPPKTPVSGTKNGKDLSTPVPMKMEPPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -