Nnit013026.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- bab1
- Assembly
- GCA_947347705.1
- Location
- OX374616.1:11813060-11829598[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-17 2.3e-14 53.7 0.0 1 43 102 145 102 147 0.95 2 2 7.3 9.2e+03 -2.6 2.0 6 15 234 243 230 244 0.82
Sequence Information
- Coding Sequence
- ATGTCGGTGACCTTGAGTACGGGCCCGGCAGAAGCAAAAAGGTTTGACTGCGAAGCAATAGCAACGTTGAAACTCCCCCTAGACCTCAAAGCTGAAATTTTGTGCTTAGTGGCAGGTGATCCAAAGTCCGATGCCAAATTACTGGAAAACACCCACGCTTGGCTCGGTGCGTCCACATCTACGTCAATATCTGCAGACAGTTACCAGTATCAGCTCCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTTGTACACAACTTGAGGTTCCGCGAACGCGGCCCGCTCAAATCGTGGCGACCAGAGACAATGGCTGAAGCCATATTTTCAGTCCTAAAGGAAGGACTGTCCCTCTCGCAAGCCGCCAGGAAATACGACATACCATACCCAACATTCGTACTCTACGCCAACCGCGTCCACAACATGCTAGGACCGAGCGCTGACGGAGGCGCAGATTTGAGACCGAAGGGGCGCGGCAGACCGCAGAGAATTCTGCTTGGTGTCTGGCCTGATGAGCACATCCGCGGTGTCATCCGCGCTGTCGTCTTTAGGGACACGCACCACTCGCACCACATCAAGGAGGAGGTGCTTCCTTACCCCTCTATCACGGACGGCATGACTGTACCCACCACGTACGGCAACGTGGCGTGTGGAAATGGACGCGAAGGCGGCGTATCACCCAATGCCGCCGCGGCCGCTGCTGTGGCAGCTGTTGCGCACGGCCTGCGCCGCCAAATGTGCAACATGGTAGTAGCGGCCCAGCGTCCGCCCGACCACCCCCCACACCTCGGCTTGCCACCGTTACCACTGCAATCTCCACGGCTACCGTCACCGCTCTCCGCCGGGCTAGAGTCACCACTCTGTTCGCCCCCTCCGCCTGGACACGCTCTAGAGCCACCAAAGCCAGCCGATCCGTTCCGCCCCTTCGCCTCTCCTCGCCCGGATAGCCGATACGGTGATCGCGACATCGCGGAAATTACCGAGATGGGGCCCCCGAAGACTCCGATTTCTGCCACAGCCAAGAACGGCAAGGAGCTCTCTACGCCCCTGCCGGTGAAGATGGAGCTGCCGCCGGCGGAGGCGCGCGCGGAGAACATCTGA
- Protein Sequence
- MSVTLSTGPAEAKRFDCEAIATLKLPLDLKAEILCLVAGDPKSDAKLLENTHAWLGASTSTSISADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHSHHIKEEVLPYPSITDGMTVPTTYGNVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGDRDIAEITEMGPPKTPISATAKNGKELSTPLPVKMELPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -