Hpse004530.2
Basic Information
- Gene Symbol
- bab1
- Assembly
- GCA_947369225.1
- Location
- OX376311.1:15712017-15726234[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-17 1.5e-14 53.8 0.0 1 43 77 120 77 122 0.95
Sequence Information
- Coding Sequence
- ATGCAATTTCTCCCTGTCCTGCACAATCTCCTGCCAGTTGCTGACTTGGATTTCGCGAAGGCGAAATTACTAGAGAATTCTCACGCGTGGCTGGGAGCGTCAACATCTTCTATTGCAGCAGACAGCTACCAGTACCAACTTCAGTCCATGTGGCAGAAATGCTGGAATACGAACCAAAGCCTCGTCCACAACCTGCGGTTCCGAGAGCGTGGACCCCTCAAGTCCTGGAGACCGGAGACCATGGCTGAAGCGATCTTCTCCGTACTGAAGGAGGGGTTGTCACTTTCGCAAGCTGCGAGGAAATACGACATACCGTATCCGACGTTTGTGCTGTACGCCAACCGGGTTCACAACATGCTTGGGCCCAGCGCCGATGGCGGTGCAGATTTGAGGCCGAAGGGGCGCGGACGCCCGCAGCGGATCCTGCTGGGCGTGTGGCCGGATGAGCACATCCGCGGCGTGATCCGCGCTGTCGTGTTCCGCGACACTCACGCCCCCCACACCACACACCACATCAAAGAGGAAGTGCTTCCAGTTTACCCCTCCATCACGGACGGCATGGCGGGCGTGCAGAACGCGTACGGCAACGTGGCGTGCGGCAACGGGCGCGAGGGCGGCGTGTCGCCGAACGCGGCCGCCGCCGCCGCCGTGGCCGCCGTGGCGCACGGGCTGCGCCGCCAAATGTGCAACATGGTCGTCGCGGCCCAGCGGCCCCCCGACCACCCGCCGCACCTCGGCCTGCCGCCGCTGCCGCTGCAGTCTCCGCGCCTGCCCTCCCCGCTCTCCGCTGGCCTCGAGTCCCCGCTATGCTCGCCGCCGCCCCCGGGCCACACGCTGGAGCCGGCCAAGCCGGCTGACCCCTTCCGCCCCTTCGCATCTCCCCGCCCAGACAGCCGCTACAGCGAGCGCGACGTCGTCGCTGAAATCACAGATATGGGGCCGCCCAAGACCCCGGTGCAGATCGCCAAGAACGGCAAGGAGCAGCTATCCACACCGGTGCCGGTGAAGATGGAGCCGCCGCCGGGAGAGGCGCGCGCGGAGAACATCTGA
- Protein Sequence
- MQFLPVLHNLLPVADLDFAKAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHTTHHIKEEVLPVYPSITDGMAGVQNAYGNVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHTLEPAKPADPFRPFASPRPDSRYSERDVVAEITDMGPPKTPVQIAKNGKEQLSTPVPVKMEPPPGEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079819;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -