Ccan005341.2
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- bab1
- Assembly
- GCA_951800055.1
- Location
- OX637471.1:27092153-27097670[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-18 2.2e-14 54.0 0.0 1 43 49 92 49 94 0.95 2 2 2.9 6.5e+03 -1.9 1.6 6 15 184 193 180 195 0.83
Sequence Information
- Coding Sequence
- ATGGACGTATGGTTAGGCGAATGTATAgacagttCAGACAGTTACCAGTACCAACTTCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAGTCTGGTGCACAACCTGCGATTCCGCGAGCGCGGGCCGCTCAAGTCGTGGCGGCCAGAGACCATGGCAGAGGCCATATTCTCCGTGTTGAAGGAAGGGCTGTCACTGTCGCAAGCGGCGCGGAAGTACGACATCCCATACCCGACGTTCGTCCTGTACGCGAACCGCGTGCACAACATGCTCGGCCCCAGTGCCGACGGCGGCGCAGATTTGAGGCCCAAAGGGCGCGGTCGGCCGCAACGCATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCTGTCGTCTTCCGCGACACCCACGCGCACACCCCGCACCACATCAAAGAGGAGACGTTGcccgtctatcccgctatcacgGATGGCATCACGGTACCCAATGCTTACGGGCCTGTGGCGTGCGGTAACGGCCGAGAGGGAGGTGTGTCCCCTAatgcggccgccgccgccgccgtcgccgcCGTGGCCCACGGCCTGCGACGGCAGATGTGCAACATGGTGGTGGCGGCGCAACGGCCGCCCGACCACCCGGCGCACCTGGGGCTGCCGCCGCTGCCGCTGCAGTCGCCGCGGCTGCCGTCGCCGCTCTCAGCCGGGCTCGAGTCACCCCTGTGCTCCCCGCCCCCACCCGGGCACGCCCTGGAACCTCCAAAACCATCCGATCCATTCCGACCCTTTGCTTCACCGAGACCTGACAGCCGCTACGACCGCGACGTCGCGGAGATTACAGAAATGGGTCCCCCGAAGACGCCGATACCGATCGCGAAGAACGGCAAGGAGCTGTCATCGCCGGTGCCGGTGAAGATGGAGCCGCCGCCCTCGGAGGCGCGCGCGGAGAATATCTGA
- Protein Sequence
- MDVWLGECIDSSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHTPHHIKEETLPVYPAITDGITVPNAYGPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPAHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPSDPFRPFASPRPDSRYDRDVAEITEMGPPKTPIPIAKNGKELSSPVPVKMEPPPSEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -