g2238.t2
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- bab1
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000003.1:13838583-13841582[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-17 1.3e-14 54.0 0.0 1 43 42 85 42 87 0.95 2 3 8 8e+03 -2.9 0.0 12 22 148 157 147 157 0.71 3 3 3.9 3.9e+03 -1.9 1.6 6 15 177 186 173 188 0.83
Sequence Information
- Coding Sequence
- ATGTCTTCAGGAGCAGATAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTTGTTCACAACTTACGATTCCGCGAGCGCGGCCCACTGAAATCTTGGCGCCCTGAGACCATGGCTGAAGCTATATTCTCCGTACTGAAGGAAGGACTGTCCCTTTCTCAAGCTGCAAGGAAATACGATATACCATACCCGACGTTCGTTCTCTACGCCAACCGAGTCCATAACATGCTGGGACCCAGCGCTGATGGCGGTGCAGATTTGAGACCAAAAGGTCGCGGAAGGCCTCAGCGCATCTTGCTGGGAGTATGGCCTGACGAGCACATCCGCGGCGTGATTCGTGCCGTGGTCTTCAGAGACTCGCACGCTCCGCACTCCACACATCACATCAAGGAGGAGGTGCTCCCCGTCTATCCTGCCATCACGGATGGTATGAGCGTGCAGAACGCGTACCCTATTGCATGCGGCAACGGGCGCGAAGGCGGCGTATCGCCAAATGCAGCAGCCGCTGCCGCCGTGGCCGCCGTCGCGCATGGTCTTCGTCGCCAGATGTGCAATATGGTGGTCGCCGCTCAAAGACCACCCGATCACCCGCCACACCTCGGACTGCCCCCGCTGCCACTTCAGTCACCACGTCTACCCTCGCCGCTCTCTGCTGGACTAGAATCACCACTCTGCTCACCGCCACCACCTGGCCACGCTCTGGAACCACCGAAGCCTGCGGATCCTTTCCGCCCGTTTGCTTCACCCCGCCCCGACAGCCGCTATGGAGAACGTGACGTCGTCGCTGAGATAACTGACATGGGCCCGCCTAAGACACCGGTTTCGATCGCTAAGAACGGCAAGGATTTGTCGACGCCGCTTCCAGTCAAGATGGAGCCGCCTCCGGCCGAGGCCCGGGCGGAGAACATCTGA
- Protein Sequence
- MSSGADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHAPHSTHHIKEEVLPVYPAITDGMSVQNAYPIACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVAEITDMGPPKTPVSIAKNGKDLSTPLPVKMEPPPAEARAENI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- iTF_01078126;