Acra015574.2
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- bab1
- Assembly
- GCA_947859365.1
- Location
- OX402045.1:21765504-21771062[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-18 1.5e-14 54.1 0.0 1 43 41 84 41 86 0.95 2 2 2.6 4.3e+03 -1.9 1.6 6 15 176 185 172 187 0.83
Sequence Information
- Coding Sequence
- ATGATGTGTCAATACAGCTACCAATACCAACTTCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAAAGCCTGGTGCACAATCTGCGATTCCGCGAGCGCGGCCCGCTGAAGTCCTGGCGGCCGGAGACCATGGCCGAGGCAATCTTCTCGGTTCTGAAGGAGGGCCTGTCGTTATCGCAGGCCGCGCGAAAGTACGACATTCCCTACCCGACCTTCGTGCTGTACGCCAATCGCGTCCACAACATGCTTGGCCCGAGTGCTGACGGGGGCGCAGATTTGAGGCCCAAAGGGCGAGGCCGGCCGCAGCGCATCCTGCTGGGAGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGCGACACGCATGCCCACACCACCCACCACATCAAAGAAGAAGCCTTGCCCGTCTATCCAGCTATCACGGATGGAATGCCGGTGCCGAACGCTTACGGTCCTGTGGCTTGCGGTAACGGGCGCGAGGGTGGCGTGTCGCCCAACGCTGCCGCCGCCGCCGCTGTCGCCGCCGTGGCCCACGGCCTCCGGCGGCAGATGTGCAACATGGTGGTGGCTGCACAGCGGCCGCCTGACCACCCGCCGCACCTCGGCCTGCCGCCGCTTCCTCTGCAGTCGCCTCGACTGCCGTCCCCGCTCTCGGCCGGGCTTGAGTCGCCGCTATGCTCTCCGCCACCGCCCGGTCATGCGTTGGAACCTCCGAAACCTTCCGATCCATTCCGACCCTTCGCCTCACCAAGGCCGGACAGTCGCTACGACCGCGACGTTGCAGAGATTACTGAGATGGGTCCTCCCAAAACACCCGTTCCCATCGCGAAGAACGGGAAGGAACTGTCGTCACCTGTGCCGGTGAAAATGGAGCCGCCTCCCGCGGAGGCGCGCGCGGAGAGCATCTGA
- Protein Sequence
- MMCQYSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHTTHHIKEEALPVYPAITDGMPVPNAYGPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPSDPFRPFASPRPDSRYDRDVAEITEMGPPKTPVPIAKNGKELSSPVPVKMEPPPAEARAESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- iTF_00156178; iTF_00325307;