Npol012344.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- bab1
- Assembly
- GCA_905220585.1
- Location
- HG992241.1:14390054-14392380[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-17 1.3e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 3 7.9 7.8e+03 -2.8 0.0 12 22 134 143 133 143 0.71 3 3 3.9 3.8e+03 -1.8 1.6 6 15 163 172 159 174 0.83
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTTGTCCACAACTTACGATTCCGCGAGCGCGGCCCCCTGAAATCTTGGCGCCCTGAGACCATGGCTGAAGCTATATTCTCCGTACTGAAGGAAGGACTGTCCCTTTCTCAAGCTGCAAGGAAATACGATATACCATACCCGACGTTCGTTCTCTACGCCAACCGAGTCCATAACATGCTGGGACCCAGCGCTGATGGCGGTGCAGATTTGAGACCAAAAGGTCGCGGAAGGCCTCAGCGCATCCTGCTTGGAGTATGGCCTGACGAGCACATCCGTGGCGTGATTCGTGCCGTGGTCTTCAGAGACTCGCACGCTCCACACTCCACGCATCACATCAAGGAGGAGGTGCTCCCCGTCTATCCTGCCATCACGGATGGTATGAGCGTGCAGAACGCGTACCCTGTTGCATGCGGCAACGGGCGCGAAGGCGGCGTATCGCCAAATGCAGCTGCCGCTGCCGCCGTGGCCGCTGTCGCGCATGGTCTTCGTCGCCAGATGTGCAATATGGTGGTGGCCGCTCAACGACCACCCGATCACCCGCCACACCTCGGACTGCCCCCGCTGCCACTTCAATCACCACGTCTACCCTCGCCGCTCTCTGCTGGACTAGAATCACCACTCTGCTCACCGCCACCACCTGGCCACGCTCTGGAACCACCGAAGCCTGCGGATCCTTTCCGCCCGTTTGCTTCACCCCGCCCCGACAGCCGCTATGGAGACCGTGACGTCGCTGAGATAACTGACATGGGCCCACCTAAGACACCGGTTTCGATCGCTAAGAACGGAAAGGATTTGTCGACGCCGCTTCCAGTCAAGATGGAGCCGCCTCCGGCAGAGGCCCGTGCGGAGAACATCTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHAPHSTHHIKEEVLPVYPAITDGMSVQNAYPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGDRDVAEITDMGPPKTPVSIAKNGKDLSTPLPVKMEPPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00195103; iTF_00934658; iTF_01091619; iTF_00824633; iTF_00796448; iTF_00213348; iTF_00144485; iTF_00457170; iTF_00208774; iTF_00207815; iTF_01222407; iTF_01157579; iTF_01129966; iTF_00651654; iTF_01135686; iTF_01134713; iTF_00687816; iTF_00461481; iTF_01033647; iTF_01034459; iTF_00288778; iTF_00177995; iTF_01248011; iTF_00405843; iTF_00164248; iTF_00418892; iTF_00420468; iTF_00421276; iTF_00462316; iTF_00658282; iTF_01078126; iTF_00354001; iTF_00352976; iTF_00775953; iTF_00842577; iTF_00432050; iTF_00433064; iTF_01569234; iTF_00777331; iTF_00205046; iTF_01021111; iTF_01507094; iTF_01078997; iTF_01507990; iTF_00806615; iTF_00640200; iTF_01302216; iTF_01220582; iTF_01547447; iTF_00356057; iTF_00355013; iTF_01506265; iTF_00776667; iTF_00786684; iTF_00925651; iTF_00680445; iTF_01337694; iTF_00953440; iTF_00954337;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -