Paur038145.2
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- bab1
- Assembly
- GCA_947086415.1
- Location
- OX352289.1:44039306-44057896[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-17 3.4e-14 53.7 0.0 1 43 99 142 99 144 0.95
Sequence Information
- Coding Sequence
- ATGCGGTTTCTAGAAGACGAGATTGTTGAACTCGAAAAAAAGAAATTGGATAAGATAAAGGAACTACGTTCTATTTACTACGCGTGGGGCACGCCGTGCGGTACAAAACCCACGCACAATCTGGTGGCTAAGTTACTGGAGAGTTCGCACGCATGGCTCGGAGCCTCAACGTCATCTATCGCAGCAGACAGCTACCAGTACCAACTTCAGTCGATGTGGCAGAAGTGCTGGAACACGAATCAGAGCCTGGTGCACAATCTGCGATTCCGCGAGCGCGGGCCACTCAAGTCCTGGCGGCCGGAGACCATGGCCGAGGCCATCTTCTCCGTGCTGAAGGAGGGCCTGTCGTTGTCGCAGGCGGCGCGGAAGTACGACATCCCCTACCCCACATTCGTGCTGTACGCCAACCGCGTGCACAACATGCTGGGTCCCAGTGCCGACGGCGGCGCAGATTTGAGGCCCAAGGGGCGCGGACGGCCGCAGCGCATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGCGACACTCACGCGCACACCACGCACCACATCAAGGAGGAGACGTTGCCCGTCTATCCCGCAATCACGGATGGAATCACCGTGCCAAATGCTTACGGCCCTGTAGCGTGCGGTAACGGGCGGGAAGGGGGCGTGTCCCCCAACGCGGCAGCCGCCGCCGCCGTGGCCGCCGTGGCGCACGGGCTGCGCCGGCAGATGTGCAACATGGTGGTGGCGGCGCAGCGGCCACCCGATCACCCCCCGCACCTGGGCTTGCCTCCGCTGCCGCTCCAGTCGCCGCGGCTGCCGTCGCCGATGTCGGCCGGTCTCGAGTCGCCTCTGTGCTCACCACCCCCGCCCGGGCACGCTTTGGAACCTCCAAAACCGAATGATCCATTCCGACCCTTCGCTTCGCCGAGACCTGATAGCCGCTACGACCGCGACGTCGCAGAGATTACAGACATGGGACCTCCGAAGACCCCCATTCCGATCGCGAAGAACGGCAAAGAGCTGTCGTCACCGGTGCCAGTGAAGATGGAGCCACCGCTGATGGAGGCGCGCGCCGAGAACATCTGA
- Protein Sequence
- MRFLEDEIVELEKKKLDKIKELRSIYYAWGTPCGTKPTHNLVAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHTTHHIKEETLPVYPAITDGITVPNAYGPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPMSAGLESPLCSPPPPGHALEPPKPNDPFRPFASPRPDSRYDRDVAEITDMGPPKTPIPIAKNGKELSSPVPVKMEPPLMEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -