Carc026959.2
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- bab1
- Assembly
- GCA_036785405.1
- Location
- CM072082.1:22277734-22298007[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-17 1.9e-14 53.9 0.0 1 43 61 104 61 106 0.95 2 2 2.2 1.7e+03 -0.3 0.2 6 15 196 205 191 207 0.83
Sequence Information
- Coding Sequence
- ATGAGCGCCAAGGCAAAACTGCTTGAGAATTCTCACGCATGGCTCGGTGCCTCCACATCTTCGATCGCAGCAGATAGCTACCAATACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTCGTGCACAACCTGAGGTTCCGCGAGCGTGGGCCCCTGAAGTCCTGGCGGCCAGAGACCATGGCAGAGGCTATATTCTCGGTGCTGAAGGAGGGGCTGTCCCTCTCCCAGGCCGCGAGGAAATACGACATTCCGTACCCCACGTTTGTGCTGTACGCAAATAGGGTACACAACATGCTGGGACCGAGTGCAGACGGAGGAGCAGATTTGAGACCAAAAGGTCGCGGGCGGCCGCAGCGCATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTGGTGTTCCGCGActcgcacgccgcgcacgccgcgcaccacatCAAGGAGGAGGTGCTGCCCGTCTACCCCGCCATCACGGACGGCATGACCGCGGTGCAGAACGCGTACCCGGTGCCGTGCGGCAACGGGCGCGAGGGCGGCGTGTCGCCGAACGCGACCGCCGCCGCCGTGGCTGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGTGGCCGCGCAGCGACCGCCAGACCACCCGCCGCACCTCGGCCTGCCCCCGCTGCCGCTGCAGTCCCCGCGGCTGCCCTCGCCGCTGTCCGCCGGGCTGGAGTCCCCGCTgtgctcgccgccgccgcccggccACGCGCTCGAGCCGCCCAAGCCCGCCGACCCGTTCCGACCCTTCGCTTCGCCCCGCCCTGACAGCCGCTACAGCGACCGCGACGTGGTCGCGGAGATCACCGACATGGGGCCGCCTAAGACGCCGATCTCGATGAACAAAAACGGCAAGGAGCTGTCGTCGCCGCTGCCGGTGAAGATGGAGCTGCCGCCGGCGGAGGCGCGCGCCGAGAACATCTGA
- Protein Sequence
- MSAKAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHAAHAAHHIKEEVLPVYPAITDGMTAVQNAYPVPCGNGREGGVSPNATAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYSDRDVVAEITDMGPPKTPISMNKNGKELSSPLPVKMELPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079819;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -