Cmed014470.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- bab1
- Assembly
- GCA_014851415.1
- Location
- Chr1:4905028-4921096[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 9e-15 53.9 0.0 1 43 57 100 57 102 0.95 2 2 3.3 2.6e+03 -2.0 1.6 6 15 192 201 188 203 0.83
Sequence Information
- Coding Sequence
- GCGAAGCTGCTGGAGAACTCTCACGCATGGCTTGGTGCCTCCACCTCCTCTATCGCAGCAGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGTCGCTGGTGCACAACCTGCGGTTCCGCGAGCGCGGGCCCCTCAAGTCCTGGCGCCCGGAGACCATGGCCGAAGCCATCTTCTCCGTCCTGAAGGAGGGACTCTCCCTCTCCCAGGCTGCGAGGAAATACGACATACCGTACCCAACATTTGTGCTTTACGCAAACCGAGTACACAATATGCTCGGACCAAGCGCTGATGGTGGTGCAGATTTGAGGCCGAAAGGGCGCGGGCGGCCGCAGCGCATCCTGCTCGGGGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGGGACACTCACGCGCCCCACCCCACCCACCACATCAAGGAGGAGGTCCTCCCGTACCCCTCGATCACGGACGGGATCAACGTGCCGAACACGTACGGCAACGTGTCGTGCGGCAACGGGCGCGAGGGCGGCGTGTCGCCGAACGCCGCCGCGGCCGCGGCCGTGGCCGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGTGGCGGCGCAGCGCCCGCCCGACCACCCGCCGCACCTCGGCCTGCCGCCGCTGCCGCTGCAGTCGCCGCGGCTGCCCTCGCCGCTGTCCGCCGGGCTCGAGTCGCCGCTGTGCTCGCCGCCGCCGCCCGGTCACGCCCTAGAACCACCCAAGCCCGCCGACCCGTTCCGCCCGTTCGCATCGCCCCGCCCCGACAGCCGCTACGGTGAGCGCGACGTGGTGGCCGACATAACCGAGATGGGTCCGCCGAAGACCCCCGTCCCGATGGCGAAGAACGGCAAGGAGCTGTCGTCGCCGGTGCCGGTGAAGCTGGAGCTGCCGCCGGCGGAGGCGCGCGCCGAGCACATGTGA
- Protein Sequence
- AKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHPTHHIKEEVLPYPSITDGINVPNTYGNVSCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVADITEMGPPKTPVPMAKNGKELSSPVPVKLELPPAEARAEHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -