Nio013046.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- bab1
- Assembly
- GCA_905147045.1
- Location
- LR989895.1:3635909-3638250[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.5e-18 1.3e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 3 5.2 7.8e+03 -2.8 0.0 12 22 134 143 133 143 0.71 3 3 2.5 3.8e+03 -1.8 1.6 6 15 163 172 159 174 0.83
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTTGTCCACAACTTACGATTCCGCGAGCGCGGCCCACTCAAATCTTGGCGCCCCGAGACCATGGCTGAAGCTATATTCTCCGTACTGAAGGAAGGACTGTCCCTTTCTCAAGCTGCAAGGAAATACGATATACCATATCCGACGTTCGTTCTCTACGCCAACCGAGTCCATAACATGCTGGGACCCAGCGCTGATGGCGGTGCAGATTTGAGACCAAAAGGTCGCGGAAGGCCTCAGCGCATCCTACTGGGAGTATGGCCTGACGAGCACATCCGCGGCGTGATTCGTGCCGTGGTCTTCAGAGACTCGCACGCTCCGCACTCCACCCATCACATCAAGGAGGAGGTGCTCCCCGTCTATCCTGCCATCACGGATGGTATGAGCGTGCAGAACGCGTACCCTGTTGCATGCGGCAACGGGCGGGAAGGCGGCGTATCGCCAAATGCAGCTGCCGCTGCCGCCGTGGCTGCCGTCGCTCATGGTCTTCGTCGTCAAATGTGCAATATGGTGGTTGCCGCTCAACGACCACCCGATCACCCGCCACACCTCGGACTGCCCCCGCTGCCACTTCAGTCACCACGCCTACCTTCGCCGCTCTCTGCTGGACTGGAATCACCACTATGCTCACCACCGCCTCCTGGCCACGCTCTGGAACCACCGAAGCCTGCGGATCCTTTCCGCCCCTTTGCTTCACCCCGTCCCGACAGCCGCTATGGAGAACGTGACGTCGTCGCTGAGATAACTGACATGGGCCCGCCTAAGACTCCGGTTTCGATTGCTAAGAACGGAAAGGATTTGTCGACGCCACTTCCTGTCAAGATGGAGCCGCCTCCGGCAGAGGCACGTGCGGAGAACATCTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHAPHSTHHIKEEVLPVYPAITDGMSVQNAYPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVAEITDMGPPKTPVSIAKNGKDLSTPLPVKMEPPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079819;
- 90% Identity
- iTF_01080655;
- 80% Identity
- iTF_01507094;