Hcos015833.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- bab1
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000282.1:651618-659020[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-17 2.3e-14 54.0 0.0 1 43 45 88 45 90 0.95 2 2 7.8 6.9e+03 -1.9 1.6 6 15 181 190 177 192 0.83
Sequence Information
- Coding Sequence
- ATGCTACTCTCTCTATTTTCAGCAGACAGCTACCAGTACCAACTTCAGTCCATGTGGCAGAAGTGTTGGAACACCAACCAGAGCCTGGTCCATAACTTGCGCTTTCGAGAGCGCGGTCCCCTCAAGTCGTGGAGGCCCGAGACCATGGCAGAGGCAATATTCTCCGTGCTGAAGGAGGGTCTGTCCCTCTCCCAAGCAGCGAGGAAATACGACATACCATACCCGACCTTCGTACTCTATGCCAACAGGGTCCACAACATGCTAGGACCCAGTGCCGATGGTGGAGCAGATTTGAGGCCGAAGGGTCGCGGGCGCCCGCAGCGCATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTGATCCGAGCTGTCGTCTTCCGAGATACCCACGCGCCTCACTCGGCGCACCACATCAAGGAGGAGGTGCTGCCTGCCTATCCCCAGATCACGGATGGCATGACCGTGGGTACAGCATACGGAACCGTCGCTTGCGGAAACGGGCGCGATGGCGGCGTGTCGCCGAACGCGGCTGCGGCGGCCGCCGTCGCCGCCGTGGCGCACGGCCTGCGCCGACAGATGTGCAACATGGTGGTCGCAGCACAACGGCCGCCGGACCACCCGCCGCACCTGGGGCTGCCGCCGCTGCCCCTGCAGTCGCCGCGGCTGCCGTCTCCGCTGTCTGCCGGGCTAGAGTCACCTCTGTGCTCTCCGCCGCCGCCCGGCCACGCGCTCGAGCCGCCCAAGCCGGCTGACCCTTTCCGCCCGTTCGCTTCCCCCCGCCCCGATAGCCGTTACGGCGAACGCGACGTCGTGGCCGAGATCACAGACATGGGCCCGCCGAAAACTCCGGTGGCGCTCGCCAAGAACGGCAAAGACATGACAGCCGCGGTGCCCGTGAAGATGGAGCCGCCCCCGGCGGAGGCGCGTGCGGAGAACATGTGA
- Protein Sequence
- MLLSLFSADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHSAHHIKEEVLPAYPQITDGMTVGTAYGTVACGNGRDGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVAEITDMGPPKTPVALAKNGKDMTAAVPVKMEPPPAEARAENM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -