Dvan000489.2
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- bab1
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000009.1:2261688-2263905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-17 1.9e-14 54.1 0.0 1 43 39 82 39 84 0.95 2 2 7.9 5.7e+03 -1.9 1.6 6 15 174 183 170 185 0.83
Sequence Information
- Coding Sequence
- atggcAGATAGCTACCAGTACCAGCTGCAATCCATGTGGCAAAAATGCTGGAACACCAACCAAAGTCTGGTGCACAACTTGCGTTTTCGCGAACGTGGACCTCTCAAGTCTTGGCGCCCCGAGACCATGGCAGAGGCTATATTCTCCGTTCTGAAAGAGGGGCTTTCCCTCTCCCAAGCTGCCAGAAAATACGACATACCGTATCCGACTTTCGTGCTGTATGCAAACAGAGTGCACAATATGCTCGGTCCCAGCAGTGACGGTGGTGCAGATTTGAGACCCAAAGGTCGTGGACGGCCGCAACGCATCCTACTGGGCGTATGGCCTGACGAGCACATTCGTGGCGTCATCCGCGCCGTCGTCTTCCGCGACTCGCACACGTCGCACTCCGCCCACCACATCAAGGAGGAAGTGCTCCCTGTCTATCCTCCCATCACGGATGGCATGAGTGTGCAGAACGCGTATCCTGTAGCATGTGGCAATGGGCGCGAAGGCGGGGTATCACCCAACGCCGCCGCCGCTGCCGCCGTGGCGGCGGTCGCGCACGGGCTGCGCCGACAGATGTGCAACATGGTGGTGGCGGCGCAACGCCCGCCCGACCACCCGCCGCACCTGGGCCTGCCGCCGCTGCCACTACAGTCGCCGCGCCTGCCCTCGCCGCTGTCCGCCGGCCTGGAGTCTCCGCTGTGCTCGCCGCCGCCGCCGGGCCACGCGCTCGAACCGCCCAAACCCGCTGACCCATTCCGACCTTTTGCTTCGCCTCGACCGGACAGCCGCTATGGAGAACGTGATGTCGTTTCCGAAATAACCGAAATGGGCCCGCCTAAGACACCGGTGTCGATGGTAAAGAACGGTAAGGATCTGACAACTCCACTGCCGGTGAAGATGGAGCTACCGCCGGCAGAAGCTCGAGCAGAGCACATCTGA
- Protein Sequence
- MADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHTSHSAHHIKEEVLPVYPPITDGMSVQNAYPVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLGLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYGERDVVSEITEMGPPKTPVSMVKNGKDLTTPLPVKMELPPAEARAEHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_01080655;
- 80% Identity
- -