Ccau004694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
lrrfip2
Assembly
GCA_035041775.1
Location
JAWNKW010000070.1:2356807-2367511[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.9e-119 3.6e-115 384.5 25.9 1 299 30 321 30 322 0.99
2 2 0.07 1.3e+03 -1.6 2.9 215 240 346 370 323 394 0.47

Sequence Information

Coding Sequence
ATGGATAGTTCCAATGCTACCGGTCGACGGCGAAGTAATACACGCGTTAATGCTGAGGATAATGCACTCGATCAAATTACAAAGGAGGCCGAAGCACGTCTGGCAGCGCGTCGTCAAGCTCGCGCCGAGGCTCGTGAAATACGCATGCGCGAACTGGAACGCCTACAAAAGGAGCAGGAACAAAACGCTGATCGTGTCTTTGATATGCATAATGCCAGTGGCAGTGCCATCAGCGATACGCTCTCCACACATCCCGCACGCCTTGGCTACGGTGGCCTTTTAAATATGACGCGAGCCACAGCCTCACGTCGCAGCAGCGAGGATTCGCTGGAAGAGGAAGGTAGAAGCCTGCGTGATATCAAGCAGGAGCTTAAAGACGTGGAGGAACGTTTTCGCAAAGCGATGATCACAAATGCCCAGCTAGACAACGACCGCGCATCACAAACCTATGAGGTTAAGTTGCTCAAGGATAAAAGCGAAAGCATGCAGGAATCCTATGCGCAGCTGCAGCGCGAATTCAAAGAGAAATCGCGCGATTGTAATGCCCTCAAACGGAATCTGGATCGTACAAGTCTGGAGCTAAAGCTGGTGCAGGGACAACTAAGCGAACGTGATGCGCTGATAGCAGAACAGGGTCTTGTGATTGTTGCCATTGAGAATGCGGATGGCAGTGATGCCAAGCGTGCTCTAGTCAGTGTGGAGAATGCAAATGTGTTGGCCTCTGTGCAGGGTTCGCTAGATGTAAGACTTAAAAAGTTCAACGAAGAGAAGCATCAGCTGCTGGCCGAAGTGCAAAAATTGAACGAACAGTTGGAAGCGTTTAAAAGTGATGGCAAACCGGGACGTGGCAGCTCAACGAATGGACCCTTTGGTTACGATGATGATTATGAAGCTCAAAgagaagcaaacaaaatcatatctgaatataaatataaactacAAAAGGCTGAACAGGAAATCGCCAGTTTGCAGGCGAGCTTAGCACGTTCCGAAACGCAAGTCATACGCTATAAGAGCACAGCGGAGGCGGCCGAAAAGGCGGAAGCCGAGCTAAAAGTTGAGCGGCGAAAGTTGCAACGTGAGCACCGCGAAACGCTTGAGCGTCTGGAAGAAGCGGAAACGGCTAATAATCATATATTAAAGCGTTTGGATAAGTTAAAAAATGCCAAGAGCGCAATACTGAAGGACTTATGA
Protein Sequence
MDSSNATGRRRSNTRVNAEDNALDQITKEAEARLAARRQARAEAREIRMRELERLQKEQEQNADRVFDMHNASGSAISDTLSTHPARLGYGGLLNMTRATASRRSSEDSLEEEGRSLRDIKQELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKSESMQESYAQLQREFKEKSRDCNALKRNLDRTSLELKLVQGQLSERDALIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFNEEKHQLLAEVQKLNEQLEAFKSDGKPGRGSSTNGPFGYDDDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHRETLERLEEAETANNHILKRLDKLKNAKSAILKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00564641; iTF_00501795; iTF_00511267; iTF_00553028; iTF_00560260; iTF_00588836; iTF_00582949; iTF_00528038; iTF_00535302; iTF_00549543; iTF_00552295; iTF_00597351; iTF_00567528; iTF_00513449; iTF_00500300; iTF_00496589; iTF_00482223; iTF_00498864; iTF_00607056; iTF_00570385; iTF_00576337; iTF_00522162; iTF_00557202; iTF_00609874; iTF_00901491; iTF_00516980; iTF_00543733; iTF_00546645; iTF_00619830; iTF_00574039; iTF_00499576; iTF_00514168; iTF_00485850; iTF_00548794; iTF_00598874; iTF_00616187; iTF_00558652; iTF_00832156; iTF_00525118; iTF_00542430; iTF_00566782; iTF_00616894; iTF_00495103; iTF_00518431; iTF_00521343; iTF_00595935; iTF_00497376; iTF_00472354; iTF_00595237; iTF_00553722; iTF_00562462; iTF_00533794; iTF_00585190; iTF_00522951; iTF_00585960; iTF_00601785; iTF_00583674; iTF_00528797; iTF_00509091; iTF_00614179; iTF_00520622; iTF_00476615; iTF_01320460; iTF_00608435; iTF_00547348; iTF_00557908; iTF_00599573; iTF_01327160; iTF_01356126; iTF_00584415; iTF_00804386; iTF_00916230; iTF_00914498; iTF_00919814; iTF_00918125; iTF_00917205; iTF_00504681; iTF_00604834; iTF_00539651; iTF_00578531; iTF_00619144; iTF_00588137; iTF_00607786; iTF_00494379; iTF_00591691; iTF_00596651; iTF_00581524; iTF_00505397; iTF_00529557; iTF_00507607; iTF_00536759; iTF_00548057; iTF_00602585; iTF_00486558; iTF_00511999; iTF_00592384; iTF_00515586; iTF_00605563; iTF_00919051; iTF_00915326; iTF_00525870; iTF_00593827; iTF_00612803; iTF_00533092; iTF_00617639; iTF_00541064; iTF_00488655; iTF_00571888; iTF_00524405; iTF_00561749; iTF_00478009; iTF_00490073; iTF_00482971; iTF_00492223; iTF_00489365; iTF_00527298; iTF_00613499; iTF_00485127; iTF_00609161; iTF_00594541; iTF_00491504; iTF_00574801; iTF_00480850; iTF_00563898; iTF_01319026; iTF_00492952; iTF_00565368; iTF_00514877; iTF_00601044; iTF_00531645; iTF_00606300; iTF_00480157; iTF_00563167;
90% Identity
-
80% Identity
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