Scal000574.1
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000034.1:1-11756[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-114 3.2e-110 368.0 24.8 1 299 1 291 1 292 0.98 2 2 0.39 6.3e+03 -4.0 0.2 210 228 311 328 298 333 0.48
Sequence Information
- Coding Sequence
- GCAGAAGCGCGCTTGGCAGCTCGTCGACAAGCCCGGGCCGAAGCTCGTGAGATTCGTATGCGAGAGCTTGagcggcaacaaaaagaacaggAGCAGAATGCTGACCGCGCATTTGACATGCACACCAGTAACACTTTAATCATCGACACTTTTTCATCACATGCCGCACGTTCTACCTACGGTGGTCTTTTAAACTTAGCTCGGTCAACCGCATCCCGTCGCAGCAGTGAAGATTCATTGGAAGACGAAGGTCGTAGCTTGCGTGATATTAAACATGACCTTAAAGAAGTTGAAGAACGCTTTAGGAAAGCAATGATAACGAATGCCCAGCTAGACAACGACCGGTCATCTCAGACCTATGAAATAAAGCTTCTTAAAGATAAAAGTGAGACAATGCAAGAGGCTTTTGCACAACTTCAGCGCGagcttaaaaataatttaagggATTGTAATGCCCTAAAACGAAACTTGGATCGCACAACACTTGAACTGAACTTGGTACAAGGCCAGCTAACGGAACGCGATATGTTAATAGCAGAACATGGCctcgttattgttgtcattgagAATACCGATGGAAGCGATGCCAAGCGGGCTCTAGTTAGTATTGAAAACGCAAGTACTTTGGCAACAGTACAAGGCTCGCTGGATGTAAGACTAAAACAGCTGTCTGGCGAAAAGGAACGTCTTCTAATCGAAACGCAAAATCTGCGTGAACAGTTAGATGCTTATAAAACTGAAGGCCGCGGTGGACGCGGTAATTCATTAAATGGACCTGTAGGCTATGATGATGATTACGAACTTCAAAgagaagcaaataaaatcatatcagattacaaatacaaactgcAAAAAGCTGAACAGGAAATCGCAAGTCTTCAGGCAAGTTTGTCCCGCTCGGAGACGCAGGTTGTACGATATAAGAGCACAGCAGAAGCAGCCGAAAAAGCAGAGGCAGAACTAAAAGTCGAACGACGGAAACTGCAACGTGAAAATTTCAATGCTACGACGACCGAAGACGTCTAG
- Protein Sequence
- AEARLAARRQARAEAREIRMRELERQQKEQEQNADRAFDMHTSNTLIIDTFSSHAARSTYGGLLNLARSTASRRSSEDSLEDEGRSLRDIKHDLKEVEERFRKAMITNAQLDNDRSSQTYEIKLLKDKSETMQEAFAQLQRELKNNLRDCNALKRNLDRTTLELNLVQGQLTERDMLIAEHGLVIVVIENTDGSDAKRALVSIENASTLATVQGSLDVRLKQLSGEKERLLIETQNLREQLDAYKTEGRGGRGNSLNGPVGYDDDYELQREANKIISDYKYKLQKAEQEIASLQASLSRSETQVVRYKSTAEAAEKAEAELKVERRKLQRENFNATTTEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_01327160;
- 80% Identity
- -