Dsuz005101.1
Basic Information
- Insect
- Drosophila suzukii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013340165.1
- Location
- WWNF01000004.1:13123431-13127295[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-120 2.6e-116 388.0 29.1 1 299 30 320 30 321 0.99 2 2 0.013 2.2e+02 0.8 3.7 209 242 339 371 323 394 0.60
Sequence Information
- Coding Sequence
- ATGGAAAGTATCAGCACTACAGGTCGGCGGCGGAACAACATGCGAATCAATGCCGAAGATAATGCCCTGGATCAAATTACAAAAGagGCGGAAGCGCGACTCGCCGCGCGTCGACAGGCGCGTGCCGAAGCCCGCGAGATTCGCATGAAGGAGCTGGAGCGCCagcagaaggagcaggagATATCCGCCGACCGGGTGTTCGACATGCACAACTCCAGTGCCGTGGGCAGCGAAACCCTCTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGCCTGATAAACGTATCCCGTGCCTCAGCATCCCGCCGCAGCAGCGAGGACTCCGTTGAGGAGGAGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAGCGGTTTCGGAAAGCCATGATAACGAATGCCCAGTTGGACAACGATCGTGCCTCGCAGGCCTATGAGGTTAAGCTGCTTAAGGACAAGTGCGAAATCATGGAGGAGTCCTTTGCCCAGCTGCAGCGCGAGTTCAAGGAGAAGATGCGCGACTGCAATGCCCTCAAGCGGAACCTGGACCGCGCCAATCTAGAGCTTAAACTAGTACAAGGACAGCTGAACGAGCGCGACTCGTTGATAGCCGAACAGGGCCTGCTGATTGTGGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGAGAGCTCTAGTGAGTGTTGAGAACGCAAAGGTTTTGGCGTCCGTTCAGGGTTCTTTAGATGTAAGACTCAAGAAGTTCAGTGACGAGAAACAGCGACTGCTGGCAGAGGTGCAAAAGCTACACGAACAGCTGGATGAGTATAAAAGTGATGGGATGACTGGACGTCGCAGTCTTTCGCAAGGTTCCTTTGGTGATGAGAATGATTACGAGGCCCAACGGGAATCAAACAAAATCATTTCAGACCATAAATATAAGCTGCAAAAGGCGGAACAGGAAATCGCCAACTTGCAATCGAGCTTAGCCCGTTCAGAGACTCAGGTGATTCGATACAAAAGCACTGCGGAGGCCGCCGAAAAGGCGGAGGCAGAGCTGAAAGTCGAGCGCCGTAAGCTGCAACGCGAGCACCGGGAACTCTTGGAAAAATTGGAGGAAGCCGAGACGTCAAACAACCACTTGCTGAAACGCCTTGACAAATTGAAAAACGCCAAGAGTGCCATTCTAAAGGACTTATGA
- Protein Sequence
- MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMKELERQQKEQEISADRVFDMHNSSAVGSETLSAHPVRLAYGGLINVSRASASRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYEVKLLKDKCEIMEESFAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQLNERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLKKFSDEKQRLLAEVQKLHEQLDEYKSDGMTGRRSLSQGSFGDENDYEAQRESNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00602585;
- 80% Identity
- -