Sred011432.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010001052.1:199697-216234[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-117 1.6e-112 375.6 19.8 1 299 30 320 30 321 0.97 2 2 0.39 6.8e+03 -4.0 0.3 131 143 344 356 328 367 0.46
Sequence Information
- Coding Sequence
- ATGGACATCACAAATACCACCGGTCGGCGGCGAAACAATCTATGTGTTAATGCCGAGGATAATGCGCTCGATCAAATAACAAAGGAGGCCGAAGCTCGCTTGGCAGCTCGCCGACAAGCTCGTGCCGAAGCTCGTGAGATTCGTATGCGAGAGCTTGAgcggcaacaaaaagaacaggAACAAAATGCTGACCGCGCATTCGACATGCACACCAGTGGCAGTATTATTATCGACAATTTTCCATCACACCCCACACGTACTACTTACGGTGGTCTCCTTAATCTAACACGATCAACAGCTTCACGACGCAGCAGTGAAGATTCATTGGAAGACGAAGGTCGCAGCTTGCGTGATATTAAACTTGATCTTAAAGAAGTTGAAGAACGCTTTAGAAGAGCAATGATAACGAACGCCCAGCTAGACAACGACCGCTCATCGCAAACCTACGAAGTCAAGCTTCTTAAAGATAAAGGTGAAACGATGCAGGAGGCTTTTGCACAACTTCAGCGCGAACTTAGAAATAAATTGAGGGATTGTAATGCTCTAAAACGAAACTTGGACCGCACAACACTTGAATTGAACCTGGTACAAGGCCAGCTAACCGAACGCGATTCTTTAATAGCCGAACATGgccttgttattgttgcttttgaaaatactGATGGAAGTGATGCAAAGCGGGCTCTAGTCAGTATTGAAAACGCCAATACCTTGGCGACTGTGCAGGGTTCGTTGGATGTAAGACTAAAAAAGCTGGCAGgagaaaaggaaaggcttctTATCGAAATGCAAAATCTGCGTGAACAGTTAGATGCTTATAAAAGTGAAGGCCGCGGTGGACGCGGTAGTTCATCAAATGGCCCTTTAGgttatgatgatgattacgAACTTCAAAGagaatcaaataaaatcatatcAGATTATAAATACAAACTACAAAAAGCTGAACAGGAAATCGCATGTCTTCAGGCAAGCTTATCACGGTCGGAGACGCAAGTTATACGATATAAAAGCACGGCAGAAGCCGCCGAAAAATCAGAGGcagaactaaaagtcgaacgAAGGAAGCTGCAACGTGAACTTTTGAACTATCGAGGTAAAACCGTGGCCATGGCCTGTAATGTTACATCATTTGTCGAAATCGGCTAG
- Protein Sequence
- MDITNTTGRRRNNLCVNAEDNALDQITKEAEARLAARRQARAEAREIRMRELERQQKEQEQNADRAFDMHTSGSIIIDNFPSHPTRTTYGGLLNLTRSTASRRSSEDSLEDEGRSLRDIKLDLKEVEERFRRAMITNAQLDNDRSSQTYEVKLLKDKGETMQEAFAQLQRELRNKLRDCNALKRNLDRTTLELNLVQGQLTERDSLIAEHGLVIVAFENTDGSDAKRALVSIENANTLATVQGSLDVRLKKLAGEKERLLIEMQNLREQLDAYKSEGRGGRGSSSNGPLGYDDDYELQRESNKIISDYKYKLQKAEQEIACLQASLSRSETQVIRYKSTAEAAEKSEAELKVERRKLQRELLNYRGKTVAMACNVTSFVEIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_01320460;
- 80% Identity
- -