Dinn009080.1
Basic Information
- Insect
- Drosophila innubila
- Gene Symbol
- lrrfip2
- Assembly
- GCA_004354385.1
- Location
- NC:39225648-39360435[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-117 9.6e-113 376.0 27.1 1 299 30 318 30 319 0.97 2 2 0.019 2.5e+02 0.3 3.4 208 241 336 368 321 392 0.65
Sequence Information
- Coding Sequence
- ATGGACACCACAACCACTACCGGTCGACGGCGAAACAATATGTGTGCTAATGCCGAGGATAATGCTCTCGATCAAATAACAAAGGAGGCCGAAGCGCGTCTCGCTGCTCGTCGCCAAGCACGTGTTGAAGCTCGTGAAATACGTATGCGAGAGCTTGAGCGGCAGCAAAAGGAACAGGAGCAAAATGCAGACCGGGCTTTTGATATGCAAAGTATAAGTGGCAATAGTATTCACGACACACATCCTACACGTCTCGTTTACGGTAACCTTGTTAACTTGACGCGTGCAGCAGTTTCGCGCCGCAGCAGTGAGGATTCATTAGAAGAGGAGGGCCGCAGCTTGCGGGACATCAAGAATGATCTTAAAGAAGTCGAAGAACGTTTCCGCAAGGCAATGATAACAAATGCTCAATTGGACAATGACCGGTCATCTCAAACTTATGAAGTCAAATTACTGAAGGATAAAAGCGAAACAATGCAAGAGTCTTTTGCACAGCTGCAGCGAGAgctcaaaaacaaattgcgcGATTGTAACGCACTCAAACGCAATTTGGACCGAACAACACTTGAATTGAGCTTGGTCCAGGGGCAACTAAGCGAACGCGATGCGCTTATTGCAGAACATGGTCTAGTTATTGTAGCCATTGAGAATACTGACGGTAGCGATGCCAAAAGGGCATTAGTTAGTGTTGAAAACGCTAATATTTTGGCGACCGTTCAGGGATCGCTTGatGTAAGACTCAAAAAGTTTTCAGAGGAAAATCAACGACTTTTGATGGAAGTGCAAATGCTACATGAGAAGTTggatacttttaaaaatgaagGCCGGACCGGTCGCTGTAGTTCGTTGAATGGGTCCTTGGGATATGACGATGATTATGATGTTCAAAGAGAAGCAAATAAGATAGTATCAgattataaatacaaactgCAAAAGGCTGAACAGGAAATCGCTAATCTACAAGCAAACTTATCACGTTCGGAGTCGCAAGTGATTCGATACAAAAGCACGGCAGAAGCAGCGGAGAAAGTGGAGTCAGAATTAAAAGTGGAACGGCGCAAACTGCAACGTGAGCATCGCGAGATTCTGGAGCGCCTTGAAGAAGCAGAAACTGCAAATAACCACCTACTAAAACGTCttgataaacttaaaaatgcaAAGAGCACGATATTGAAGGATTTATGA
- Protein Sequence
- MDTTTTTGRRRNNMCANAEDNALDQITKEAEARLAARRQARVEAREIRMRELERQQKEQEQNADRAFDMQSISGNSIHDTHPTRLVYGNLVNLTRAAVSRRSSEDSLEEEGRSLRDIKNDLKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQESFAQLQRELKNKLRDCNALKRNLDRTTLELSLVQGQLSERDALIAEHGLVIVAIENTDGSDAKRALVSVENANILATVQGSLDVRLKKFSEENQRLLMEVQMLHEKLDTFKNEGRTGRCSSLNGSLGYDDDYDVQREANKIVSDYKYKLQKAEQEIANLQANLSRSESQVIRYKSTAEAAEKVESELKVERRKLQREHREILERLEEAETANNHLLKRLDKLKNAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00472354;
- 80% Identity
- -