Sjav012644.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010006278.1:1-2531[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-115 7.7e-110 369.5 23.3 1 299 1 293 1 294 0.98 2 2 0.036 4.1e+03 -0.6 3.6 212 241 315 343 295 367 0.50
Sequence Information
- Coding Sequence
- GCCGAGGCGCGGTTAGCGGCACGTCGTCAAGCCCGGGCGGAGGCACGTGAAATACGAATGCGGGAACTTgagaaacagcaaaaggagCAGGAACAAAGCGCGGATCGCGCTTTCGACATGCAAAATATTGGCGGAATGGTCATCAATGATTCGATGCTAACGCATCCCACACGGATCACTGGTTATGGTGGCATTCTGGGCATGGCACGTTCAGCTGTTTCGCGTCGCAGCAGCGAGGATTCACTGGAGGAGGAAGGTCGGAGTTTGCGAGACATTAAACTTGAGCTTAAAGAAGTGGAAGAACGATTTCGGAAAGCCATGATAACGAATGCACAGCTGGACAACGATCGTTCATGTCAGACTTACGAAGTGAAGTTACTTAAggataaaagtgaaataatgCAAGAGTCGTGCGCACAATTGCAGCGCGAGTTGAAGAACAAATTGCGTGACTGCAATGCGCTGAAACGGAACTTGGATCGCACAACGCTTGAGCTGAATTTGGTTCAAGGACAATTGATCGAACGTGATGCGCTTATAGCCGAGCATGGCCTTGTCATAGTAGCTATCGAGAACGAGGATGGCAGCGATGCCAAGCGAGCATTAGTCAGAGTTGAAAACGCCAATATATTGGCCACAGTTCAAGGCTCTCTAGACGTAAGACTTAAGAGATTTGCggaggagaagcagcagcttgTTTCTGAATTGGCAAAGTTACGTGAACAGCTGGACACCTATAAAAGTGAGGGCAGAGAGGGACTAAGGGGTTCCTTGAGCGGTTCATTgggcaatgatgatgattacgATGTTCAAAgAGAAGCCAATAAAATCATAtcagattataaatataaactgcAAAAGGCCGAACAAGAAATTGGTAGCCTTCAGGCCAGTTTAGCTCGTTCCGAGACTCAAGTGATACGATATAAAAGTACGGCAGAAGCAGCTGAAAAAGCAGAGGCTGAATTGAAAGTCGAACGGCGCAAACTGCAGCGTGAACACCGGGAAGTCTTAGAGCGTttagaagaaacagaaacagccaATAATCATTTGCTAAAAAGACTCGATAAGCTAAAAACGGCAAAAAGTGCAATCTTAAAGGACTTATGA
- Protein Sequence
- AEARLAARRQARAEAREIRMRELEKQQKEQEQSADRAFDMQNIGGMVINDSMLTHPTRITGYGGILGMARSAVSRRSSEDSLEEEGRSLRDIKLELKEVEERFRKAMITNAQLDNDRSCQTYEVKLLKDKSEIMQESCAQLQRELKNKLRDCNALKRNLDRTTLELNLVQGQLIERDALIAEHGLVIVAIENEDGSDAKRALVRVENANILATVQGSLDVRLKRFAEEKQQLVSELAKLREQLDTYKSEGREGLRGSLSGSLGNDDDYDVQREANKIISDYKYKLQKAEQEIGSLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHREVLERLEETETANNHLLKRLDKLKTAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- -
- 80% Identity
- -