Dvii004168.1
Basic Information
- Insect
- Drosophila virilis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_007989325.2
- Location
- CM017604.2:35354361-35548482[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-123 1.3e-118 395.3 23.3 1 299 29 320 29 321 0.99 2 2 0.04 5.6e+02 -0.8 4.0 210 241 340 370 323 395 0.55
Sequence Information
- Coding Sequence
- ATGGACAGTACAGGCGCCGGTCGGCGGCGGAACAATATATGTGTTAATGCCGAGGATAATGCGCTCGATCAAATTACGAAAGAGGCCGAAGCGCGCTTAGCAGCTCGTCGTCTAGCTCGCGCTGAAGCTCGGGAGATACGAATGCGTGAGCTTGAGCGACAACAAAAGGAATTGGAGCAAAACGCTGACCGTGCATTCGATATGCAAAGCACAAGTGGCAGTGTTATTATTGACACACTCTCATCACATCCCACACGCCACGGATATAGTGGTCTTGTAAATTTGGTACGTGCAACAACATCGCGACGCAGTAGTGAAGATTCATTGGAGGACGAAGGTCGCAGTTTCCGTGATATTAAACACGAACTTAAAgaAGTCGAAGAACGGTTTCGAAAGGCTATGATAACGAATGCCCAACTAGACAACGACCGCTCATCTCAAACCTATGAAGTGAAGCTACTCAAAGATAAAAGTGAAACAATGGAGGAATCTTTCGCGCAACTGCAGCGggaattcaaaaacaaacttcGCGATTGCAATACCCTCAAACGCAACTTGGAACGCACAACACTGGAATTAAGCCTAGTGCAAGGCCAGTTATGCGAGCGAGATGCACTAATAGAAGAGCACGGTCTTATTATTGTTTCCATTGAGAATAGTGATGGCAGTGACGCTAAACGGGCTCTAGTGAGTGTTGAAAACGCCAATATTTTGTCAACCGTACAGGGTTCTCTTGATGTTAGACTCAAAAAGTTTGCAGAGGAAAATCAGAGACTTCTGAATGAAATACAAAAGCTTCATGAACAGTTAGGTGCATTTAAAAGTGAAGGTAGAGTTGGACGCGGAAGTTCGTTGTGTGGCTCTTTAAGGTACGATGATGACTATGAGGTTCAAAGAGaatcaaataaaatcatatcagattataaatataaactacAAAAAGCTGAACAGGAAATCGCTAGTCTCCAAGCTAACTTAGCACGATCTGAAACACAAGTTATACGTTATAAAAGCACGGCAGAAGCAGCCGAAAAGGCAGAGGCTGAACTGAAAGTTGAGCGCCGTAAGCTGCAACGTGAGCATCGGGAGATTTTGGAACGTTTGGAGGAAGCAGAAACCGCTAATAACCATCTACTTAAACGACTTGATAaacttaaaaatgcaaaaagcacAATATTAAAGGAATTATAA
- Protein Sequence
- MDSTGAGRRRNNICVNAEDNALDQITKEAEARLAARRLARAEAREIRMRELERQQKELEQNADRAFDMQSTSGSVIIDTLSSHPTRHGYSGLVNLVRATTSRRSSEDSLEDEGRSFRDIKHELKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMEESFAQLQREFKNKLRDCNTLKRNLERTTLELSLVQGQLCERDALIEEHGLIIVSIENSDGSDAKRALVSVENANILSTVQGSLDVRLKKFAEENQRLLNEIQKLHEQLGAFKSEGRVGRGSSLCGSLRYDDDYEVQRESNKIISDYKYKLQKAEQEIASLQANLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHREILERLEEAETANNHLLKRLDKLKNAKSTILKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00563167;
- 80% Identity
- -