Dalb012473.1
Basic Information
- Insect
- Drosophila albomicans
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009650485.1
- Location
- NC:29719365-29724169[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-115 5.8e-111 370.1 28.7 1 299 30 311 30 312 0.97 2 2 0.028 3.7e+02 -0.2 3.3 209 241 330 361 314 385 0.60
Sequence Information
- Coding Sequence
- ATGGATACCACAAGTACCACAGGTCGGAGGCGAAACAATATCTGTGCTAATGCCGAGGATAATGCGCTCGACCAAATTACAAAGGAGGCTGAGGCACGTCTGGCAGCTCGTCGTCAAGCACGCGTAGAAGCTCGAGAAATACGCATGCGTGAGTTGGAGCGGCAACAAAAGGAACAAGAGCACAATGCCGATCGTGCCtttgatatgcaaaatatCAGTGGCAGCGTCATTCACGATATACCTCGTCTTCTAAACTTAACACGTGCAGCAGCTTCGCGACGAAGTAGTGAGGATTCATTGGAAGAGGAAGGCCGCAGCGTTCGTGACATCAAACATGAACTTAAAgAAGTCGAAGAGCGCTTTCGGAAGGCAATGATAACAAATGCTCAATTGGACAATGATCGCTCATCTCAAACATATGAGGTTAAACTACTGAAGGATAAAAGAGAAACGATGCAGGAGTCTGTTGCCCAACTACAACGCgagcttaaaaataaattgcgaGATTGTAATGCGCTTAAACGAAATTTGGACCGAACAACACTTGAATTGAGTTTGGTCCAAGGCCAACTAAGCGAACGAGATACGTTAATAGCAGAGCATggtcttgttattgttgccattgAGAATACGGACGGCAGTGATGCCAAGAGGGCGTTAGTTAGTGTTGAAAACGCAAATATTTTGGCTACCGTTCAGGGATCAATTGATGTAAGACTTAAAAAGTTTGCAGAGGAAAAGCAGCTGCTTTCAACGCAAGTACAAGTACTGCATGAACAGTTAGATGCTTATAAAAGTGAAGGAAGATCCGGTCGCTGTGGTTCGTTAAATAACTCTTTGGGCTATGACGATGATTATGATGTTCAAAGAGAAGCAAATAAAGTCATATcagattataaatataaactgcAAAAAGCTGAGCAGGAAATTGCTAATCTGCAAGCAAGTTTGTCACGTTCGGAGTCGCAGGTCATCCGCTACAAAAGTACAGCCGAAGCAGCGGAGAAAGTTGAGGCGGAATTGAAAGTGGAACGGCGAAAACTGCAAAGAGAGCATCGCGAGATTCTGGAGCGTCTGGAAGAAGCAGAAACTGCAAACAACCATCTTCTGAAGCGGCTCGATAAactaaaaaatgcaaaaagtacGATCCTGAAGGATTTATGA
- Protein Sequence
- MDTTSTTGRRRNNICANAEDNALDQITKEAEARLAARRQARVEAREIRMRELERQQKEQEHNADRAFDMQNISGSVIHDIPRLLNLTRAAASRRSSEDSLEEEGRSVRDIKHELKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKRETMQESVAQLQRELKNKLRDCNALKRNLDRTTLELSLVQGQLSERDTLIAEHGLVIVAIENTDGSDAKRALVSVENANILATVQGSIDVRLKKFAEEKQLLSTQVQVLHEQLDAYKSEGRSGRCGSLNNSLGYDDDYDVQREANKVISDYKYKLQKAEQEIANLQASLSRSESQVIRYKSTAEAAEKVEAELKVERRKLQREHREILERLEEAETANNHLLKRLDKLKNAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00509091; iTF_00614179; iTF_00595237; iTF_00520622; iTF_00562462; iTF_00584415; iTF_00533794; iTF_00585190; iTF_00522951; iTF_00585960; iTF_00601785; iTF_00528797; iTF_00557908; iTF_00608435;
- 80% Identity
- iTF_00562462;