Dlim007933.1
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963924055.1
- Location
- OZ001351.1:3974380-3987380[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-119 1.5e-114 383.0 27.0 1 299 30 318 30 319 0.98 2 2 0.028 7.9e+02 -0.3 3.3 209 241 337 368 321 392 0.60
Sequence Information
- Coding Sequence
- ATGGACACCACAAGTACTACCGGTCGACGGCGAAACAATATGTGTGCTAATGCCGAGGATAATGCTCTTGATCAAATTACAAAGGAGGCCGAAGCGCGTCTAGCAGCTCGTCGTCAAGCTCGTGTTGAAGCTCGTGAGATACGTATGCGAGAGCTTGaaaggcaacaaaaagaacagGAGCAAAATGCAGACCGTGCCTTTGATATGCACAATATCAGTGGCAATGTAAATCACGATACGCATCCTACACGTCTTGTCTACGGTGGTCTTCTTAACGTGACGCGTGCGGCAGCTTCGCGCCGTAGTAGTGAGGATTCATTAGAAGAGGAGGGTCGCAGCATGCGTGACATCAAGCATGAACTTAAAGATGTCGAGGAACGTTTCCGCAAGGCAATGATAACAAATGCTCAATTGGACAACGACCGGTCATCTCAAACTTATGAAGTCAAATTACTGAAGGACAAAAGTGAAACCATGCAAGAATCTTTTGCACAACTGCAACGTGAgctgaaaaataaattgcgTGATTGTAATGCACTGAAACGTAATTTGGACCGTACAACTCTTGAATTGAGTTTGGTCCAAGGGCAATTAAACGAACGCGATGAGCTTATAGCAGAACATGGTCTTGTTATTGTAGCCATTGAGAATACTAACGGTAGTGATGCCAAACGGGCATTAGTTAGTATTGAAAATGCCAATATTTTAGCTACTGTTCAGGGTTCGCTTGATGTAAGACTTAAAAAGTTTACAGAGGAAAAACAACGACTTTTAATGGAAGTCCAAATGCTGCATGAGAAGTTGGatgcttttaaaaatgaaGGCAGGCCCGGTCGCGGTAGTTCTTTGAATGGCTCCTTGGAATATGACGATGATTATGATGTTCAAAGAGAAGCAAATAAGATAGTATCagattataaatacaaactgCAAAAGGCTGAACAGGAAATCGCCAATTTACAAGCAAGCTTATCACGTTCGGAGTCACAAGTTATTCGATATAAAAGCACGGCAGAAGCAGCGGAGAAGGTCGAGGCAGAATTGAAAGTGGAACGGCGCAAACTGCAACGTGAGCATCGCGAGATTCTAGAGCGTCTTGAAGAAGCAGAAACCGCAAATAACCATCTACTTAAACGTCTTGATAAACTAAAGAATGCAAAAAGCACGATCTTGAAGGATTTATGA
- Protein Sequence
- MDTTSTTGRRRNNMCANAEDNALDQITKEAEARLAARRQARVEAREIRMRELERQQKEQEQNADRAFDMHNISGNVNHDTHPTRLVYGGLLNVTRAAASRRSSEDSLEEEGRSMRDIKHELKDVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQESFAQLQRELKNKLRDCNALKRNLDRTTLELSLVQGQLNERDELIAEHGLVIVAIENTNGSDAKRALVSIENANILATVQGSLDVRLKKFTEEKQRLLMEVQMLHEKLDAFKNEGRPGRGSSLNGSLEYDDDYDVQREANKIVSDYKYKLQKAEQEIANLQASLSRSESQVIRYKSTAEAAEKVEAELKVERRKLQREHREILERLEEAETANNHLLKRLDKLKNAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00472354;
- 80% Identity
- -