Land019612.2
Basic Information
- Insect
- Lordiphosa andalusiaca
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035044965.1
- Location
- JAWNNM010003738.1:367876-383917[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-121 2.7e-117 391.6 25.9 1 299 54 343 54 344 0.99 2 2 0.098 1.1e+03 -1.1 3.6 210 241 363 393 345 417 0.52
Sequence Information
- Coding Sequence
- ATGGATAGTACAAGCGCCACCGGTCGACGACGGAACAATACACGAGTCAACGCCGAGGATAATGCCCTAGATCAAATCACAAAAGAGCCAAACGATGACGAAGAGAAAGAGTCGGAGAACGAGCTTTTAGTACAATTCTTGGGCGAAGCCAATCGCATTGCAGAGGCGCGATTGGCCGCGCGTCGCCAAGCACGGGCAGAAGCTCGAGAGATTCGCATGCGTGAATTGGAGCGCCAGCAGAAGGAGCAAGAACAGAACGCCGATCGAGTCTTTGACATGCAGGTTGCCAGTGGCGGTAATGATACACTTTCCGCCCATCCCGCACGCCTCATTTACGGTGGTGTCTTGAATGTTACCCGATCCACAGCATCGCGTCGCAGCAGCGAGGACTCATTGGAAGATGAAAGCCGCAGTCTACGCGATATTAAACATGAACTCAAAGATGTTGAAGAACGCTTCCGGAAAGCAATGATAACGAATGCCCAGCTAGACAACGACCGTGCATCACAGACGTACGAAGTCAAATTACTCAAGGATCGAAGCGAAAATATGCAAGAGTCCTTCGCACAGTTGCAGCGCGAATACAAAGAGAAGTTGCGCGATTGCAATGCACTGAAACGGAACTTGGATCGCACTACCCTTGAGCTGAAACTAGTGCAGGGGCAGTTGAGTGAACGCGATACTTTGATAGCGGAGCAGGGTCTTGTGATTGTAGCTATTGAGAATGCCGATGGCAGTGACGCCAAACGAGCTCTAGTCAGTGTTGAAAACGCCAATGTTCTGGCCTCCGTGCAGGGTTCGCTAGATGTAAGACTTAAAAAGTTCAGCGAAGAGAAACAGCAACTGGTGGCAGATTTGCAAAAGCTGCATGAACAGCTGGACGAATACAAAAGTGACGGCAAGATTGGACGCGGCAGTTCATCCTATGGTCCCTTCGGCTACGACGACGATTATGAGGCTCAAAGAGAAGCGAATAAAATCATATCAGATTTCAAGTATAAACTGCAAAAGGCTGAACAGGAAATCGCTAGTCTGCAGGCGAGCTTAGCACGTTCAGAAACACAGGTCATACGATATAAGAGTACAGCAGAAGCAGCCGAGAAGGCGGAGGCTGAGTTAAAAGTGGAGCGACGTAAACTGCAACGTGAGCACCGTGAAGTTTTGGAGCGATTGGAGGAAGCGGAAACAGCCAACAATCATTTGCTGAAACGACttgataaattaaaaaatgcgAAGAGCGCCATTCTCAAGGACTTATGA
- Protein Sequence
- MDSTSATGRRRNNTRVNAEDNALDQITKEPNDDEEKESENELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQVASGGNDTLSAHPARLIYGGVLNVTRSTASRRSSEDSLEDESRSLRDIKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDRSENMQESFAQLQREYKEKLRDCNALKRNLDRTTLELKLVQGQLSERDTLIAEQGLVIVAIENADGSDAKRALVSVENANVLASVQGSLDVRLKKFSEEKQQLVADLQKLHEQLDEYKSDGKIGRGSSSYGPFGYDDDYEAQREANKIISDFKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHREVLERLEEAETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00916230; iTF_00919051; iTF_00918125; iTF_00919814; iTF_00917205; iTF_00915326;
- 80% Identity
- -