Dgua005938.1
Basic Information
- Insect
- Drosophila guanche
- Gene Symbol
- lrrfip2
- Assembly
- GCA_900245975.1
- Location
- NW:1460691-1463842[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-116 4.6e-112 373.7 22.7 1 299 30 319 30 320 0.96 2 2 0.031 4e+02 -0.4 3.7 210 241 339 369 321 393 0.50
Sequence Information
- Coding Sequence
- atgGAAAGCACAAGCGTCACTGGTCGACGACGAAACAATACACGAGTGAATGCAGAGGACAACGCTCTAGATCAAATCACAAAAGAGGCTGAAGCGCGTCTTGCTGCACGTCGTCAGGCACGTGCTGAAGCTCGCGAGATACGTATGAGAGAGCTTGAACGCCAACAAAAGGAACAGGAACAAAATGCTGACCGTGTATTTGATATGCACAACTCGAGTGCCAGTTTTGGTAGTGACTCGATCTCGGCACATCCTGCACGTCTCGCCTTTGGCGgattattaaatattactCGAAACACGGCATCCCGACGTAGTAGTGAAGATTCTTTGGAGGATGAAGGCAGAAGCTTACGCGACTTCAAGCACGAGCTTAACgaTGTCGAAGAACGTTTCCGGAAAGCAATGATAACCAATGCACAGCTAGACAATGATCGTGCATCACAATCGTACGAAGTCAAATTACTTAAGGACAAATGTGAAACCGTGCAAGAGGCATTCGCACAGCTGCAGCGCGAGTTTAAAGAGAAGTCGCGTGACTGCAACGCAATTAAACGAAACTTAGACCGCATCACCGTTGAGCTTAAGCTAGTTCAAGGTCAGCTTAGCGAGCGAGATTCATTGATTGCAGAGCAGGGCCTTGTGATtgttgcaattgaaaatgccGATGGCACTGATGCCAAGCGAGCTCTAGTCAGTGTTGAAAATGCTAATGTACTGGCTTCCGTTCAGGGTTCTTTAGATGTAAGAATACAAAAGTTTAGCGATGAAAAGCAGCAATTACTATCCGAAGTGCAGaagctgcaaaataaaattaaggaGTATAAAAGCGAAGGAATTGTTGGAACTGGCTCACCGGGTCCCTTTGGTAAAGACAACGATTATGAGGCTCAAAgagaagcaaacaaaatcataTCAGACTATAAATATAAGCTACAAAAGGCTGAACAAGAAATGGCTAATCTACAATCGAGCTTAGCCCGTTCAGAGACGCAAGTTATTCGATACAAAAGCACCGCAGAAGCCGCCGaaaaggcagaagcagaattgAAAGTGGAACGCCGTAAGCTACAACGTGAGCACCGTGAAGTTTTGGAAAAACTGgaagaaacagagacagcTAATAACCATTTATTGAAACGACttgacaaattgaaaaatgcgaAAAGTGCCATTCTTAAGGACCTATGA
- Protein Sequence
- MESTSVTGRRRNNTRVNAEDNALDQITKEAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNSSASFGSDSISAHPARLAFGGLLNITRNTASRRSSEDSLEDEGRSLRDFKHELNDVEERFRKAMITNAQLDNDRASQSYEVKLLKDKCETVQEAFAQLQREFKEKSRDCNAIKRNLDRITVELKLVQGQLSERDSLIAEQGLVIVAIENADGTDAKRALVSVENANVLASVQGSLDVRIQKFSDEKQQLLSEVQKLQNKIKEYKSEGIVGTGSPGPFGKDNDYEAQREANKIISDYKYKLQKAEQEMANLQSSLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHREVLEKLEETETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00601044; iTF_00563898; iTF_00574801; iTF_00480850;
- 80% Identity
- -