Dsia007693.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000045.1:313155-325799[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-111 1.2e-107 359.5 28.4 1 299 30 311 30 312 0.97 2 2 0.12 9.3e+02 -1.3 3.4 218 241 338 361 314 385 0.52
Sequence Information
- Coding Sequence
- ATGGATGCCACAAGTACCACAGGTCGGAGACGAAACAATATCTGTGCTAATGCCGAGGATAATGCACTCAACCAAATTACAAAGGAgGCTGAGGCACGTCTTGCAGCTCGTCGTCAAGCACGCGTAGAAGCTCGTGAAATACGCATGCGAGAGTTGGAGCgtcaacaaaaagaacaagagCACAACGCCGATCGTGCCTTCGATATGCAAAATATCAGTGGCAGTGTAATTCATGACATACCTCGTCTACTAAATTTAACGCGTGTAGCAGCTTCGCGCCGCAGTAGTGAGGATTCTTTGGAGGAAGAGGGACGTAGCGTACGTGACATTAAATATGAACTTAAAGAAGTGGAGGAGCGGTTTCGTAAGGCCATGATAACAAATGCACAATTGGATAATGATCGCTCGTCTCAAACATATGAGGTTAAATTGCTCAAAGATAAGAGAGAAACGATGCAGGAGTCGGTTGCCCAACTGCAACGTgagcttaaaaataaaatccgAGATTGTAATGCGCTTAAACGAAATTTCGACCGTGCAACACTTGAATTGAGTTTGGCTCTAGGTCAATTAAGCGAACGAGATGCGTTAATTGCAGAGCATggtcttgttattgttgccattgaGAATACGGACGGCAGTGATGCCAAACGGGCATTAGTTAGTGTTGAAAACGCCAATATTTTGGCTACCGTTCAAGGATCAATTGATGTAAGACTTAAAAAAATTGCTGAGGAAAAGCAATTGCTTTTAATGCAAGTCCAAGTTTTGCATGAACAATTAGATGCTTATAAAAGCGAAGGAAAAGCTGGTCGATGTGGTTCGTTAAACAGCTCTATGAGTTATGACGATGATTATGATGTTCAAAGAGAAGCAAATAAAGTCATATCagattataaatacaaattgcaaaaagctGAGCAAGAATTAGCCAATATGCAAGCAAGCTTGTCACGTTCAGAGTCTCAAGTCATCCGATACAAAAGTACAGCCGAAGCAGCGGAAAAAGTTGAGGCCGAGTTGAAATTGGAACGCCGTAAATTACAACGAGAGAATCGCGAGATTCTGGAGCGTCTGGAAGAAGCAGAAACTGCAAACAACCATCTTTTAAAGCGGCTTGATAAATTAAAAACCGCCAAAAGTACAATTCTAAAGGATTTATGA
- Protein Sequence
- MDATSTTGRRRNNICANAEDNALNQITKEAEARLAARRQARVEAREIRMRELERQQKEQEHNADRAFDMQNISGSVIHDIPRLLNLTRVAASRRSSEDSLEEEGRSVRDIKYELKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKRETMQESVAQLQRELKNKIRDCNALKRNFDRATLELSLALGQLSERDALIAEHGLVIVAIENTDGSDAKRALVSVENANILATVQGSIDVRLKKIAEEKQLLLMQVQVLHEQLDAYKSEGKAGRCGSLNSSMSYDDDYDVQREANKVISDYKYKLQKAEQELANMQASLSRSESQVIRYKSTAEAAEKVEAELKLERRKLQRENREILERLEEAETANNHLLKRLDKLKTAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336724;
- 90% Identity
- iTF_00472354;
- 80% Identity
- -