Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589592.1:12585004-12592639[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.8 6.4e+02 3.0 0.9 1 23 54 77 54 77 0.94

2 20 0.1 18 7.9 4.1 1 23 84 107 84 107 0.97

3 20 6 1e+03 2.3 4.0 1 23 191 213 191 213 0.96

4 20 0.002 0.35 13.2 1.0 2 23 219 240 218 240 0.97

5 20 2.5 4.2e+02 3.5 1.4 1 23 246 268 246 269 0.94

6 20 0.25 42 6.7 3.4 2 22 502 522 501 522 0.95

7 20 0.1 18 7.9 2.6 1 23 619 641 619 641 0.95

8 20 0.71 1.2e+02 5.2 0.3 2 23 779 800 778 800 0.96

9 20 0.0014 0.23 13.8 0.5 2 23 880 901 879 901 0.96

10 20 0.16 27 7.3 0.3 1 23 909 931 909 931 0.97

11 20 6 1e+03 2.3 2.6 1 23 966 988 966 988 0.93

12 20 0.00029 0.049 15.9 4.0 1 23 996 1018 996 1018 0.99

13 20 0.3 51 6.4 1.2 1 23 1102 1124 1102 1124 0.96

14 20 0.77 1.3e+02 5.1 1.5 1 20 1180 1199 1180 1202 0.92

15 20 0.36 62 6.2 2.8 1 23 1297 1319 1297 1319 0.93

16 20 0.0065 1.1 11.7 1.1 1 23 1325 1347 1325 1347 0.96

17 20 0.008 1.4 11.4 2.6 1 23 1437 1459 1437 1459 0.97

18 20 0.0002 0.034 16.4 1.4 1 23 1465 1487 1465 1487 0.99

19 20 1 1.7e+02 4.8 2.7 1 23 1577 1599 1577 1599 0.96

20 20 0.012 2 10.8 5.6 1 23 1610 1632 1610 1632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.8	6.4e+02	3.0	0.9	1	23	54	77	54	77	0.94
2	20	0.1	18	7.9	4.1	1	23	84	107	84	107	0.97
3	20	6	1e+03	2.3	4.0	1	23	191	213	191	213	0.96
4	20	0.002	0.35	13.2	1.0	2	23	219	240	218	240	0.97
5	20	2.5	4.2e+02	3.5	1.4	1	23	246	268	246	269	0.94
6	20	0.25	42	6.7	3.4	2	22	502	522	501	522	0.95
7	20	0.1	18	7.9	2.6	1	23	619	641	619	641	0.95
8	20	0.71	1.2e+02	5.2	0.3	2	23	779	800	778	800	0.96
9	20	0.0014	0.23	13.8	0.5	2	23	880	901	879	901	0.96
10	20	0.16	27	7.3	0.3	1	23	909	931	909	931	0.97
11	20	6	1e+03	2.3	2.6	1	23	966	988	966	988	0.93
12	20	0.00029	0.049	15.9	4.0	1	23	996	1018	996	1018	0.99
13	20	0.3	51	6.4	1.2	1	23	1102	1124	1102	1124	0.96
14	20	0.77	1.3e+02	5.1	1.5	1	20	1180	1199	1180	1202	0.92
15	20	0.36	62	6.2	2.8	1	23	1297	1319	1297	1319	0.93
16	20	0.0065	1.1	11.7	1.1	1	23	1325	1347	1325	1347	0.96
17	20	0.008	1.4	11.4	2.6	1	23	1437	1459	1437	1459	0.97
18	20	0.0002	0.034	16.4	1.4	1	23	1465	1487	1465	1487	0.99
19	20	1	1.7e+02	4.8	2.7	1	23	1577	1599	1577	1599	0.96
20	20	0.012	2	10.8	5.6	1	23	1610	1632	1610	1632	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGCGCGCACAAGTCGGCGAGGTCGCGACTATCGTGCGCCACCTTGAAGGCCGCGTCTGCGGCGACGTGTCTTCGGAGGCCTCCTCAGACGCCGCCGAAGATTTTGAATTACCACAGTGCAAGATAAGGAGGAATTATAATTGCACCAAGTGCACGTTCTATACGCAGAACCCGCGCGCTTATCTCGTCCACACGCGCGACGCTCACTTCGTCAGACTCAAGATTTACGATTGTCCACACTGTGTTTACGCCTCCAGACATCATCAAAAACTTATAAGACACGTCAAAATGGTTCACGGAGGATCAAAACCGACTTCTGCAACTCCTAAAGTGGAAGAGCTATCACCTCCCCCCAACGACAACATGGAGCCAGCAGAGCGCATTGAAGACATGCTTGAGGAAGTCGAGGACTGCGAGGAGATGATGATGGAAGTAGATGAAGACTCCATGGACCGACCTGATGATGTCGACGGCGACGGCGACAGAAGTGTGGACTTCGGATCAACCTATCGGAGAGCACGTCTGTCAAAAGCTAAGGGCAAATTCTTCTCATGCGATAAGTGTAACTATGTCACCCACATAAGAGCTAGATTCACAAAGCACGTCAAGTATCATTCTATGCCCATGATCAAGTGTACCATGTGTGATTTTCGAACACCATACAAGTGGAATTTGGACCGTCACATGAAGAACCACGGTGGAAGTGGAAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCATACACCGGCAGCGGGCCAATCGCTGCCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTATCGCGGAGTACGACGCGGCGAGCGCGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCGGTCCTCACACTCGGTCTCGGAAATGGGTCTCCAATACGCAGACAGAGAACTAGTCAGTTGCAAAAGTGATTCCAACGACGGTACAGCTTCTGACGTAATCACCAACCGAAAGGAAACTTCGCAAGATGGATACAACCTTTCACCAACTCACAGCACAGACGAGAAGCTCCAGAAACAAAGCAGAAAGATTCCCAGGCCAATACCACAACTTATACCGTTAAATTCATCAACACCTAACCAAAAGCAAGCATGCTCTGGTGAACCACCACAGAAAAAGTTCAAAGAATCTTTAAGCGTCGACAGCGATGATGTATCTGCTGAAAATACTCTCTTACCAACAAACCCATCAATAAAAGAGACTGCTGGTCGAAAGAAAAATGAATCATTTTTCGACCGATTAAAAGAAAGACTGCTTACAGAAACAGGCGAAGAAGGTTCACTAATATGTAAGATCTGTGGATTTGAAAGTAAATGCTTATCAGAACATTCTGTTCACGAGAAAAATTGTTCACCACAAACGAATCGTATTAATGCAAACACATCGCTTAAAAGTTTAAGTTCCACTCGATGCCAAAATTGCAGACACAGGTGTAAATCTAGTGCAGACTTGTACATCCACATGCAAACTTGCGGTAAAAGCGAAACGGCCGACAATGAAAACACCATCAACATAGCAAATAGTAATGATGGAGTCATTCCAATCCACGAAACAGAGGCTGAGCCGCATCCAATGGAAAACGTCGTTTTCGTTTGGAACAATATTAATCATGACCCTAACAAGTTTGATATACCTCTAGACATAAATATTAACGATGATTCCACTCTACCAGAAATGCATCGAAGTTTTGATGCTGAGATTATTGATGACAATGAAAGCATGAATCTGTCTCCAAGTCAAGCTATTGGAAGAAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCATCCAGATTTCACGTTCATATTGTGGGCCACTTAAACAAAAAGCCATTTGAGTGTTCCCTCTGCAAATATAAATCTAATTGGAGATGGGATATAACGAAACACATTAAATTGAAATCCGCGAGGGATCCTGAGCATAATGAAGCAAAAGTACTTATGACCGATGAAACAGGAAGAAGAAATTATAGCAAATACAACAAATTCCTAGCAATGcctgttttaaatgaaaatggcgaaaatgaattccattaCCTGGATCCTAACACTGCAGTGGACAGCACGATGGAAATTGATGAATCATTTAATGATATATCAGACGTAATGAATGTTCAATATGAAATGCAACCGCTTAACTTACAGACACAGCACATTGAAGATAATTACAACAACTACACTGATAATAGAGGTCTCAATGATATGAAGAAGCCCAAGAAAACACTATGGAAatgtaaaaaatgtaattacaaagaTCCGTCTAAAGAAGCGCTTTTAGAGCACGTTCGTGAACACTCCAGATCGGAAGGCGTCCACGAGGAGCCAAACAAACCACCTGTTAAGAAACCTGAAAACAATACTCCCGACCCAGCAGATCTGGCGTACCGTTGTGGGCATTGCAATCAGCTGTCCAATTGGAAACATGTCATCCAGcGCCATTGCCGCTTAAAACACGAAGGAGTGATCAAAGTGATAACTACAGTTAAACCAAAACCTGACCCACCAATGAACATCAATGAGATCAACATTGATACCTGCAACAAATGCCCGTACAGAACGAGCGACAAAAAGCTACTCATCGCTCATTTACAACAGCATCAGCCCTCGCcgaattctattttcaagtgcTACTTCTGTCCGTTTTTCGTAAAGGATGAGCCTGAATTAATTCAACATCTACTCCTGCACGGTATCACTGACCCAGAAGATTACATCGCAAAAGCAATGGGAACTAAATCACCAGGACCAGAACCGCAAGCTCCTGCTGCTACATTAAACTCCACCAAGCGCCACAAATGCATAGAATGTCCATACGAAACAAACAGTAAGTCACAATTCATGTACCACGAACAATTTCACCGACTTCCGGCGGATACGCCATATAAATGTCCAGAATGCAACTACAGTGTTTCTAAGAGACACTTGCTGCACCAGCATCTGCGAGTCCACGGCATCGCAACCAAAAGAATCGAAACCGAGGCTGAATTAGAAGCATCAACCTCCACACAAAACAAGACGGATAAAACAGACTTCCATATTAATCTTGATGAAATACCATTTGTCTGGGTTTCGGCCAAGAATGAGTTCCATAAAATGTACAAGTGCAGATACTGTTCATACGTTAAtgcaataaaatgtaaaataccaAATCATGAAAAAATTCATTGCATCGTATTCGAAAACAATGATACAACTATTTACAAGTGTTTGGAATGCAAATTCACATGTGATAACCCTGGCAGGCTCGCCGAGCATTCCAAAGGTCATGGAGAAATATATGGTCGCATTTATTGTCCCGTTGAACATGATGTGCCAGATGAAGAACAAATCACAAAATTGAGAAAGGTTCTAGAAATGGATAAATTAGCAAATCCAGAAACTTTCTCAAGAGATGAAAGCACTACGCACGAAAATagagaaattaaattattatatttttgtcaaaAGTGCCCAGCAAGATTTTTTGATGACGGCGAACTTGAGGCTCATGAAAAATGCCATGGTGTAACAATGGCCAACACATGTGTAAGCTGTGACTTTTCGGTCACCGAAGATCTTCAAATTGCGGCACATTTTGCTGTGCACACAGATGAATATCACACAAAAACGAAGATGcttaaatttattcacaactcACATCATTTACACAAGCCACCCGTGCTAGAGCTTCGTCACAATCCAAGGACTTCAGAGATTAAGTGGATAGCCACTGGACCCAGTAAAGCTGAATATATTGAAATCcctgtaaaaaaaatgaatgataCAAAACACGTGCCAAAACAATATTGTTGCAGACAATGCCCAGCGAAGTTTTTCAAAAGTTCCGCGCTTACCTATCATACGGGGCTACACGGAGGTGAAGGCGAGCACAAGTGCAAGAAGTGCAACTACGCCGTGAAGAACATTGGAAATCTAGCCAAACATGAACTGCTTCACGAAAATGTGAACAAGGCTACGAATTGCGACTATGAATCCGGTGACGATATggattataaaaatattccaTTGTCAGGCACAGATTTATTCCAGAGGAAGACTGAGGCTCAAAAAAGGGTATTAACTGACAAAGATAAGTTAGTTAAGCCGAACGATCATTTTCCGCCTGTCCTACAAGCCGATCCCCAATTCGGTTATTTAATGCATGGTAATCCTGAATTCATATATCCCACGTACTTGAAAAATGGACGGCAAAAAGAAAAGCGATATAAATGCCACAAGTGTCCCTCAGCGTTTGAGAAAAGAGAACaatataaaattcatttatcattGCACGGCTCCAAGCAAAGATATAAATGTGAACTGTGTGATTATTCAGTAAAATATTACGCCAATTACGTTCAACATATGCGAAAACATCAAATGAATGATGAAGCTCAAGCTGAAAGGAAGAAAGGTAATGATTTTACAGAATCAGAACGTCAAGAAGACGTGAAGCCAAACGACAGCAGTGACAACATTAAACTTGCAATAAAAACTATGCCGAAAGGAGCTGCTAAGAGCGACTTTCAACAATTCTCAATTAGCGACCAACAGACGCTCAGACTGCTGCAGAGGAGACGATCAATGAATAATTCTGGAAACCTCAACACTTCTGAAACCTCGCCGATCAAAGAGCGTAAAATGCACATGTGTCTGTTATGTCCCTACACTAATCAACGTCAAGATTCTTTAAGCAATCATTACAGGAGGCACGGTGACACTGATGTCCTAAACGGTGGCAGTCATAAATGTTCACATTGCGACCTAGTGGTTGTCCAGTCGCATTTTCTTCGGGAACATCTCAAAACTCACTTCAACTACCACAAAACTCTTATTCCCGAATGTTTTGTGGCTAACGAAGCTGTTAGTTTTACCATAACCAAGTTGGATGAAGACGGTGAATCAGTTGATCTCAAATTAGACATGCAGAACAAGAGTTATGCATGTAATGATGAAAAGATTTTTGTGAAAATACAAACTGGAGAGCTATTGGTGGAATAA
Protein Sequence: MLQQMSSPPRAQVGEVATIVRHLEGRVCGDVSSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHGGSKPTSATPKVEELSPPPNDNMEPAERIEDMLEEVEDCEEMMMEVDEDSMDRPDDVDGDGDRSVDFGSTYRRARLSKAKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPAAGQSLPSRRRNRVGASDTVIAEYDAASALLPKEEEGSGDSRSSHSVSEMGLQYADRELVSCKSDSNDGTASDVITNRKETSQDGYNLSPTHSTDEKLQKQSRKIPRPIPQLIPLNSSTPNQKQACSGEPPQKKFKESLSVDSDDVSAENTLLPTNPSIKETAGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTSLKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSETADNENTINIANSNDGVIPIHETEAEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTLPEMHRSFDAEIIDDNESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTAVDSTMEIDESFNDISDVMNVQYEMQPLNLQTQHIEDNYNNYTDNRGLNDMKKPKKTLWKCKKCNYKDPSKEALLEHVREHSRSEGVHEEPNKPPVKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSPNSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKAMGTKSPGPEPQAPAATLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRIETEAELEASTSTQNKTDKTDFHINLDEIPFVWVSAKNEFHKMYKCRYCSYVNAIKCKIPNHEKIHCIVFENNDTTIYKCLECKFTCDNPGRLAEHSKGHGEIYGRIYCPVEHDVPDEEQITKLRKVLEMDKLANPETFSRDESTTHENREIKLLYFCQKCPARFFDDGELEAHEKCHGVTMANTCVSCDFSVTEDLQIAAHFAVHTDEYHTKTKMLKFIHNSHHLHKPPVLELRHNPRTSEIKWIATGPSKAEYIEIPVKKMNDTKHVPKQYCCRQCPAKFFKSSALTYHTGLHGGEGEHKCKKCNYAVKNIGNLAKHELLHENVNKATNCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGNDFTESERQEDVKPNDSSDNIKLAIKTMPKGAAKSDFQQFSISDQQTLRLLQRRRSMNNSGNLNTSETSPIKERKMHMCLLCPYTNQRQDSLSNHYRRHGDTDVLNGGSHKCSHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTITKLDEDGESVDLKLDMQNKSYACNDEKIFVKIQTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00772479; iTF_00121954; iTF_00072357; iTF_01425577; iTF_00450606; iTF_00172370; iTF_01119845; iTF_00112135; iTF_01118847; iTF_01117869; iTF_01532645; iTF_00001606; iTF_00000774; iTF_01027846; iTF_01030695; iTF_00952296; iTF_00953155; iTF_00974240; iTF_01362088; iTF_01363495; iTF_00302665; iTF_01340714; iTF_01339528; iTF_00040366; iTF_00041384; iTF_00042222; iTF_00044060; iTF_00121006; iTF_00425966; iTF_00364513; iTF_00623585; iTF_00831682; iTF_00907464; iTF_01526603; iTF_01441550; iTF_01440597; iTF_00906651; iTF_00908381; iTF_00449694; iTF_00375840; iTF_01488142; iTF_00327448; iTF_01085907; iTF_01084755; iTF_01247667; iTF_00173762; iTF_00374760; iTF_00685947; iTF_01533557; iTF_00929177; iTF_01062366; iTF_01064256; iTF_01534402; iTF_00238279; iTF_00301704; iTF_01063337; iTF_01026891; iTF_01029735; iTF_01031543; iTF_00712460; iTF_01286031; iTF_00446704; iTF_00447787; iTF_00445710; iTF_00043089; iTF_00043073; iTF_01065170; iTF_01535442; iTF_00786392; iTF_00785625; iTF_00783995; iTF_00784828; iTF_00148089; iTF_00177689; iTF_01193241; iTF_00274847; iTF_00274079; iTF_00888799; iTF_01028815; iTF_01378011; iTF_00300769; iTF_00037379; iTF_00852296; iTF_01539209; iTF_00726922; iTF_00851278; iTF_00039379; iTF_00384215; iTF_00017790; iTF_00810623; iTF_00809696; iTF_01527871; iTF_00124767; iTF_00122924; iTF_00123807; iTF_00038275; iTF_00746309; iTF_01095459; iTF_01093638; iTF_00668044; iTF_01094489; iTF_00758748; iTF_00925312; iTF_00071887;
90% Identity: iTF_00726922;
80% Identity: -