Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990956.1:11843820-11851998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3 2.8e+02 3.0 0.9 1 23 53 76 53 76 0.94

2 21 0.026 2.5 9.4 4.1 1 23 83 106 83 106 0.97

3 21 4.8 4.5e+02 2.3 4.0 1 23 188 210 188 210 0.96

4 21 0.0016 0.15 13.2 1.0 2 23 216 237 215 237 0.97

5 21 0.62 58 5.1 1.7 1 23 243 265 243 266 0.95

6 21 0.2 19 6.7 3.4 2 22 510 530 509 530 0.95

7 21 0.083 7.8 7.9 2.6 1 23 627 649 627 649 0.95

8 21 0.57 54 5.2 0.3 2 23 786 807 785 807 0.96

9 21 0.035 3.3 9.0 0.5 2 23 888 909 887 909 0.96

10 21 0.32 30 6.0 1.2 1 23 917 939 917 939 0.97

11 21 4.8 4.5e+02 2.3 2.6 1 23 975 997 975 997 0.93

12 21 0.00023 0.022 15.9 4.0 1 23 1005 1027 1005 1027 0.99

13 21 4.7 4.4e+02 2.3 5.0 1 23 1112 1134 1112 1134 0.98

14 21 4.3 4e+02 2.5 0.7 1 19 1190 1208 1190 1212 0.91

15 21 1.2 1.1e+02 4.2 0.3 2 23 1220 1241 1219 1241 0.95

16 21 0.045 4.2 8.7 0.9 1 23 1308 1330 1308 1330 0.94

17 21 0.0052 0.49 11.6 1.1 1 23 1336 1358 1336 1358 0.96

18 21 0.0065 0.61 11.4 2.6 1 23 1448 1470 1448 1470 0.97

19 21 0.00016 0.015 16.4 1.4 1 23 1476 1498 1476 1498 0.99

20 21 0.17 16 6.9 2.3 1 23 1589 1611 1589 1611 0.97

21 21 0.0027 0.26 12.5 4.1 1 23 1622 1644 1622 1644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3	2.8e+02	3.0	0.9	1	23	53	76	53	76	0.94
2	21	0.026	2.5	9.4	4.1	1	23	83	106	83	106	0.97
3	21	4.8	4.5e+02	2.3	4.0	1	23	188	210	188	210	0.96
4	21	0.0016	0.15	13.2	1.0	2	23	216	237	215	237	0.97
5	21	0.62	58	5.1	1.7	1	23	243	265	243	266	0.95
6	21	0.2	19	6.7	3.4	2	22	510	530	509	530	0.95
7	21	0.083	7.8	7.9	2.6	1	23	627	649	627	649	0.95
8	21	0.57	54	5.2	0.3	2	23	786	807	785	807	0.96
9	21	0.035	3.3	9.0	0.5	2	23	888	909	887	909	0.96
10	21	0.32	30	6.0	1.2	1	23	917	939	917	939	0.97
11	21	4.8	4.5e+02	2.3	2.6	1	23	975	997	975	997	0.93
12	21	0.00023	0.022	15.9	4.0	1	23	1005	1027	1005	1027	0.99
13	21	4.7	4.4e+02	2.3	5.0	1	23	1112	1134	1112	1134	0.98
14	21	4.3	4e+02	2.5	0.7	1	19	1190	1208	1190	1212	0.91
15	21	1.2	1.1e+02	4.2	0.3	2	23	1220	1241	1219	1241	0.95
16	21	0.045	4.2	8.7	0.9	1	23	1308	1330	1308	1330	0.94
17	21	0.0052	0.49	11.6	1.1	1	23	1336	1358	1336	1358	0.96
18	21	0.0065	0.61	11.4	2.6	1	23	1448	1470	1448	1470	0.97
19	21	0.00016	0.015	16.4	1.4	1	23	1476	1498	1476	1498	0.99
20	21	0.17	16	6.9	2.3	1	23	1589	1611	1589	1611	0.97
21	21	0.0027	0.26	12.5	4.1	1	23	1622	1644	1622	1644	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGAGCGCACAAGTCGGCGAGGTTGCGACTATCGCGCGCCACCTTGAAGGCCGTGTCTGCGGCGACGTCTCCTCAGAGGCTTCCTCGGATGCCGCAGAAGATTCTGAATTACCACAGTGCAAGATAAGGAGGAATTATAATTGCACTAAATGCACGTTCTATACGCAGAACCCGCGCGCTTATCTCGTCCACACGCGTGACGCTCACTTTGTAAGACTTAAGATTTACGATTGCCCACACTGTGTTTACGCTTCGAGACATCATCAGAAATTGATAAGGCATATCAAAATGGTTCATGCAGGATCAAAACAGACATCAGGGACTGGGAAATTGGATACTGAGTTATCATCTCCCACTTTCGACAATGTGGAGCAAGCAGAGCGAATCGAAGACTTATTGGAAGAAGTCGAGGACTGCGAGGATATGATGATGGAAGTAGATGATGACTCCATGGAACGTCCTGATGACATCGATGTTGAGTGTGATAGGGCTGCTGACCAAGCAGCGCCATCTGAAGTATCAAAAACTAAGGGCAAATTCTTTTCATGCGATAAGTGCAACTATGTGACCCACATAAGAGCTAGATTCACAAAACACGTCAAGTACCATTCGATGCCGATGATCAAATGTACAATGTGTGATTTCCGAACACCCTACAAGTGGAATTTGGATCGTCACATGAAAAACCACGGTGGAACTGGTAGTTTCAAATGTTCGATGTGTAACTTTACGGCGGACATCAAGCAGAGTCTGACAGTGCACGAAATGAATCATCACACACCGGCAGCGGGCCAATCGCTCCCGAGTCGCCGCCGCAACCGGGTGGGTGCCAGCGACACGGTTACCGCGGAGTTGGACGCAGCGAGCGCGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCGGTCCTCACACTCGTTCTCGGACATGGGTCTACAATACGCAGAAAGGGAAATGGTCAGTTGCAAAAGTGACTCTAACGACGCTACTGCATCTGACGCAATTACCAAAAAAGACTCCTTGCACCTGTCTCAAGATGGATATAGCCAGCTTTCACCGAACCACAGTGCAGATGAGAAGTCACAAAAACAGAGTAGAAAGATTCCCAGACCAATACCACAACTCATACCGCTAAATGCATCCACCCCAAACCAAAAACAAACGTGTCCTGGTGAACCCCCACATAAAAAGTTTAAAGAATCTGTTACAAACGAAATAGATGATTCCAATTCAGGAAGTAAAATTGAAGACTTATCTAGTGATATTACTGTATTCCCTGTAAATTCTATAAAAGAACCTGCAGGCCGTAAGAAGAACGAATCGTTTTTCGATAGATTAAAGGAAAGACTACTAACAGAAACTGGTGAAGAAGGATCTCTTAAGTGCAAAAACTGTGGATTTGAAAGTAAATGTTTATCAGAACATTCAGTGCATGAGAAAAATTGTTCACCACAAACTAACCGGGTCAATGCAAACTCGTCCCTTGCAAGTTTAAGTTCAACACGTTGCCAAAATTGCAGACACAGATGTAAATCTAGTGCTGATCTATACATACACATGCAAACTTGCGGAAAGAATGAAAAGATGGAAGACGAAAATAATATTAAAAGTCAAGATAGTAACGATGCAATCATTCCAATCCATGAAAAAGAGACTGAACCACATCCAATGGAAAACGTCGTGTTCGTTTGGAACAATATTGGTCATGATACTAACAAGTTTGATATACCTCTAGACATAAATATAAATGACGATTGTACTCTGCCAGAAACACATAAAAGTTTCGACGCTGAAATTGTTGATGAAAATGAATCTATGAATATGTCACCGAGTCAAGCAGTCGGTAGAAAGGTATTTAAATGTCCACATTGTCCTTTTTTCTCCACGACAGCATCCAGATTTCACGTCCACATCGTGGGTCACTTAAACAAGAAACCATTTGAGTGTTCTCTCTGCAAATATAAATCTAATTGGAGATGGGATATAACAAAACATATTAAATTGAAATCCGCGAGAGATCCAGAGCATAATGATGCGAAAGTATTAATGACTGATGAAACAGGGCGAAGGAACTATAGCAAGTATAACAAATTCCTAGCAATGCCAATTTTGAATGAAAATGGTGAAAATGAGTTTCATTATCTAGATCCCAATACATCGGTCGATGGCTCGATGGAAATAGATGAATCCTTAAACGATGTATCTGACGTCATGAATGTTCAATTTGAAATGCAACCGCTTAACTTACAGACGCAACACAATGAAGATAAGTACGACTTTATGGATAACAGAGGTCTACATGATTTGAAGAAACCTAAGAAAACATTGTGGAAATGTAAAAAATGTAACTACAAAGACCCATCAAAAGAAGCTCTCCTAGAGCATGTTCGTGAACACTCTAGATCGGATGGCATCCTGGATGATCAGAACAAACATCATGCTAACAAGAAAACTGAAAATAATGCTCCTGATCCAGCAGATTTGGCGTATCGTTGTGGTCATTGTAATCAACTGTCTAACTGGAAACATGTCATCCAGCGTCATTGCCGATTGAAACACGATGGAGTTATCAAAGTCATAACCACAGTTAAACCAAAACCAGACCCACCAATGAACATAAACGAGATCAACATCGACACCTGCAATAAGTGTCCGTTCCGATCAAGTGACAAAAAGGTTCTTATTGCACATTTACAACAACATCAGCCTTCACCGAATTCAATCTTCAAGTGCTACTTCTGTCCATTTTTCGTTAAGGATGAACCAGAACTAATTCAACATCTTCACCTTCACGGTATAACTGATCCAGAAGATTACATAGCAAAAGCGATGGGAACCAAATCACCAGTACCAGAACTGCTGACGCCTGCAGCTACATCATCAAACTCAACTAAGCGTCACAAATGTATAGAATGCCCTTACGAAACGAACAGCAAGTCACAGTTCATGTACCACGAACAATTTCATAGACTTCCAGCAGACACTCCTTATAAATGTCCAGAATGCAATTACAGCGTATCTAAACGACACTTGCTTCACCAACATCTGCGAGTTCACGGAATTGCAACCAAAAGAGTTGAAAGTGAGGCCGAACTAGAGGCATCGATATCGACACAAAATAAATTAGACGTTAAAGGTGACTTTTACATTAATTTAGATGAAATACCGTATGTATGGGTATCGGCAAAGAACGAATTCCATAAAATGTACAAGTGCCGTTACTGTTCGTACGTTAATTCCCATAAATGTAAAATTCCAAATCATGAAAAAATACATTGTATTGTGTTCGAAAACAATGACACAACTATTTACAAGTGCTTGGAATGCAAATTTACATGTGACAACGCCTGCAGGTTAGCTGAGCATTCTAAATCACACGGCGAAATATATGGTCGCATTTATTGTCCCGTTGAAGATGATGTGCCCGATGAAGAACAAATTACAAAATTAAGAAAAGTTATAGAAATTGAAAAGTCAACTAATTCGGAAGGATTTCCTAAAGATGAAGGTTCAGTAAACGAAAGTAGAGAAATAAAATTATTATATTTTTGCCAAAAGTGTCCTGCAAGATATTTTGATGATGAGGAATTAGAAGTTCATGACAAGTTCCATGATACAGCAACATATTCAAATAAATGTAAAAGTTGTGAGTTTTCAACTCCCGAGGAGGATGAGCTGACAGCACATTTTACCGTACATACCGACGAATATCATACCAAAACCAAAATGCTTAAATTTATTCACAACACACACCCTTCACACAGACAACCCATCCTAGAGCTAGTGCACTGTCCGACTACTTCAGAGATCACGTGGATAGCTACAGGGCCCAATAAAATAGAAAATATCGAAAGTCCTATGAAAAAGTGTAATGATGCGAAAAACGTGCCAAAACAATATAATTGCAAACAATGTCCTGCAAAGTTTTTCAAGACTTCGGCGCTTACTTATCACTTGGGATTACACGGAGGTGAAGGGGAGCATAAGTGTAAGAAATGCAACTATGCAGTAAAAAATATTGGAAATTTAGCAAAACATGAATTATTGCACGAATATGAGAACAAACCTGCCAACTGTGATTATGAATCTGGTGAAGATATGGATTACAAAAACATTCCATTGTCCGGTACAGATCTGTTCCAGAGAAAGACTGAGGCTCAAAAAAGAGTCTTAACAGATAAAGATAAGCTAGTTAAGCCAAACGATCACTTTCCGCCTGTCTTACAAGCCGATCCACAATTTGGCTATTTGATGCATGGTAATCCCGAATTTATATATCCCACGTACCTAAAAAATGGTCGACAAAAAGAAAAGAGATACAAATGCCACAAGTGCCCATCAGCGTTTGAAAAACGCGAACAATACAAAATTCATTTATCATTGCATGGTTCCAAACAAAGATATAAGTGTGAATTATGTGACTATTCCGTCAAATATTACGCTAATTATGTTCAGCATATGAGAAAACATCAAATGAACGATGAAGCTCAAGCTGAAAGAAAGAAAGGTAATAATGATTTTATGGAATCTGAAAATCAAAAAGATGTTAAGCTAGACGACAGTAGTGATAATATTAAACTTGCAATAAAAACCATGCCAAAGGGGGCTCCTAAGAGTGACTTTCAACAATTCTCAATTAGTGACCAGCAAACGCTGAGACTACTGCAGCGAAGACGGTCAATGAACAATTCAAGTAAGGACGTAACGTCTGAAAACTCACCGACGAAAGAGCGTAAAATGCACGTGTGTTTATTATGCCCCTACACAAATCAACGTCAAGATTCTTTAAATAACCATTATCGGAGGCATGATCCGGCCGATGTTCTTAACTCAGGAAGCCATAAATGCCCACATTGTGATCTTGTGGTAGTGCAGTCTCATTTTCTGCGGGAACATGTGAAAACGCACTTCAACTACCATAAAACACTTGTTCCTGAATGCTTTGTGGCTAACGAAGATGTCAGTTTTACCGTAACTAAACTTGACGAAAATAGTGAGTCTGTTGATCTCAAATTAGACATGCAAAACAAGAAGTTTACATGTAATGTTGATAAAATATTTGTGAAAATTAAAACTGGAGAACTAATGGTGGAATAA
Protein Sequence: MLQQMSSPSAQVGEVATIARHLEGRVCGDVSSEASSDAAEDSELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHIKMVHAGSKQTSGTGKLDTELSSPTFDNVEQAERIEDLLEEVEDCEDMMMEVDDDSMERPDDIDVECDRAADQAAPSEVSKTKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFKCSMCNFTADIKQSLTVHEMNHHTPAAGQSLPSRRRNRVGASDTVTAELDAASALLPKEEEGSGDSRSSHSFSDMGLQYAEREMVSCKSDSNDATASDAITKKDSLHLSQDGYSQLSPNHSADEKSQKQSRKIPRPIPQLIPLNASTPNQKQTCPGEPPHKKFKESVTNEIDDSNSGSKIEDLSSDITVFPVNSIKEPAGRKKNESFFDRLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCSPQTNRVNANSSLASLSSTRCQNCRHRCKSSADLYIHMQTCGKNEKMEDENNIKSQDSNDAIIPIHEKETEPHPMENVVFVWNNIGHDTNKFDIPLDININDDCTLPETHKSFDAEIVDENESMNMSPSQAVGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPILNENGENEFHYLDPNTSVDGSMEIDESLNDVSDVMNVQFEMQPLNLQTQHNEDKYDFMDNRGLHDLKKPKKTLWKCKKCNYKDPSKEALLEHVREHSRSDGILDDQNKHHANKKTENNAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPFRSSDKKVLIAHLQQHQPSPNSIFKCYFCPFFVKDEPELIQHLHLHGITDPEDYIAKAMGTKSPVPELLTPAATSSNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRVESEAELEASISTQNKLDVKGDFYINLDEIPYVWVSAKNEFHKMYKCRYCSYVNSHKCKIPNHEKIHCIVFENNDTTIYKCLECKFTCDNACRLAEHSKSHGEIYGRIYCPVEDDVPDEEQITKLRKVIEIEKSTNSEGFPKDEGSVNESREIKLLYFCQKCPARYFDDEELEVHDKFHDTATYSNKCKSCEFSTPEEDELTAHFTVHTDEYHTKTKMLKFIHNTHPSHRQPILELVHCPTTSEITWIATGPNKIENIESPMKKCNDAKNVPKQYNCKQCPAKFFKTSALTYHLGLHGGEGEHKCKKCNYAVKNIGNLAKHELLHEYENKPANCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGNNDFMESENQKDVKLDDSSDNIKLAIKTMPKGAPKSDFQQFSISDQQTLRLLQRRRSMNNSSKDVTSENSPTKERKMHVCLLCPYTNQRQDSLNNHYRRHDPADVLNSGSHKCPHCDLVVVQSHFLREHVKTHFNYHKTLVPECFVANEDVSFTVTKLDENSESVDLKLDMQNKKFTCNVDKIFVKIKTGELMVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: -
80% Identity: -