Msep011659.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
IKZF1
Assembly
GCA_030763345.1
Location
CM061176.1:8486114-8490797[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.2 19 7.0 3.4 2 22 182 202 181 202 0.95
2 16 0.082 7.8 8.2 2.6 1 23 298 320 298 320 0.95
3 16 0.57 54 5.6 0.3 2 23 458 479 457 479 0.96
4 16 0.0011 0.1 14.1 0.5 2 23 559 580 558 580 0.96
5 16 0.13 12 7.6 0.3 1 23 588 610 588 610 0.97
6 16 4.8 4.5e+02 2.6 2.6 1 23 646 668 646 668 0.93
7 16 0.00023 0.022 16.2 4.0 1 23 676 698 676 698 0.99
8 16 0.098 9.3 8.0 1.8 1 23 782 804 782 804 0.96
9 16 5.7 5.4e+02 2.4 1.7 1 19 860 878 860 882 0.88
10 16 0.97 92 4.8 0.1 2 23 889 910 889 910 0.93
11 16 0.035 3.4 9.4 2.5 1 23 977 999 977 999 0.95
12 16 0.0052 0.49 12.0 1.1 1 23 1005 1027 1005 1027 0.96
13 16 0.0064 0.61 11.7 2.6 1 23 1115 1137 1115 1137 0.97
14 16 0.00016 0.015 16.7 1.4 1 23 1143 1165 1143 1165 0.99
15 16 0.32 30 6.4 2.9 1 23 1255 1277 1255 1277 0.96
16 16 0.0094 0.89 11.2 5.6 1 23 1288 1310 1288 1310 0.98

Sequence Information

Coding Sequence
ATGGGTCTCCAATACGCAGAGCGGGAACTAGTCAGTTGCAAAAGTGATTCCAACGATGGTACAGCTTCCGACGCAATCACAAACCGAAAAGAAACTTCACAAGATGGATACAACCTGTCACCAACCCACAGCACAGAcgagaagcaacagaaacaaaGCAGAAAGATTCCAAGACCAATACCACAACTCATACCGTTGAACTCATCAACACCAAACCAAAAACAGACATGCTCTGGTGAACCACCACAGAAGAAGTTCAAAGAATcgttaccagtcgacagcgacgATGTATCAGCTGAAAATACTCTCTTACCAGCAAACCCATTAATAAAAGAGACTGCAGGTCGAAAGAAAAATGAATCATTTTTCGACAGATTAAAAGAAAGACTGCTTACAGAAACAGGCGAGGAAGGTTCACTCATATGTAAGATCTGTGGATTTGAAAGTAAATGCCTATCAGAACATTCCGTACACGAGAAAAATTGTTCCCCACAAACAAATCGGATCAATGCAAACACTTCGCTTAAAAGTTTAAGTTCGACTCGATGCCAGAACTGCAGACACAGGTGTAAGTCTAGTGCAGACTTGTACATACACATGCAAACTTGCGGAAAGAGCGAAACGGCCGACAATGAAAACATTAACATTGCGAATAGTAATGATGGAGTCATTCCGATCCATGAAACAGAGACTGAGCCGCATCCAATGGAAAACGTCGTTTTCGTTTGGAACAACATTAATCATGACCCAAACAAGTTTGATATACCTCTAGACATAAATATAAATGACGATTCCACTTTGCCAGAAATGCATCGCGGTTTTGATGCCGAGATTGTCGATGATAATGAAAGCATGAATCTGTCGCCAAGTCAAGCCATTGGAAGGAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCATCAAGATTTCACGTTCATATCGTGGGTCACTTAAACAAGAAGCCATTTGAGTGTTCCCTCTGCAAATATAAGTCTAATTGGAGATGGGATATAACCAAACACATTAAGTTGAAATCCGCAAGGGATCCGGAACATAATGACGCAAAAGTACTTATGACCGATGAAACAGGCAGAAGAAACTATAGCAAATACAACAAATTCTTAGCAATGCCTATTTTAAATGATCATGGTGAAAATGAATTCCATTACCTGGATCCTAACACGGCAGTCGACAGTACAATGGAAATCGATGAATCATTTAACGATATATCAGACGTTATGAATGTACAATTTGAAATGCAACCGCTAAACCTACAAACACAACATATTGAAGATAGTTATAATAACTATATTGACAATAGAGGTCTCAACGATATGAAGAAACCCAAGAAAACGTTATGGAaatgtaaaaaatgtaattacaaaGATCCCTCAAAAGAAGCACTTCTAGAGCATGTCCGAGAACACTCCAGATCGGATGGCGTCCATGATGAGCCACACAAGCCACCGGTTAAGAAACCTGAGAACAACACGCCCGACCCAGCAGATCTAGCGTATCGTTGTGGACATTGCAATCAACTGTCGAATTGGAAACATGTCATCCAGcGCCATTGCCGATTAAAACATGATGGAGTGATCAAAGTCATAACTACAGTCAAACCAAAACCTGACCCGCCAATGAACATCAATGAGATCAACATTGACACCTGCAACAAATGTCCGTACAGAACAAGTGACAAAAAGCTACTCATCGCTCATTTACAACAGCACCAGCCCTCGGCGGATTCTATTTTCAAGTGCTACTTCTGTCCGTTCTTCGTAAAGGATGAGCCTGAATTAATTCAACATCTGCTCCTACACGGTATCACGGACCCAGAAGATTACATCGCAAAAGCAATGGGAACTAAATCGCCAGGACCAGAACCGCCAGCTCCACCTACTACGACGTTAAACTCTACCAAGCGCCACAAATGCATAGAGTGCCCATACGAAACAAACAGTAAGTCACAATTCATGTACCACGAACAGTTTCATCGACTTCCGGCAGACACGCCTTACAAATGTCCAGAATGCAACTACAGCGTCTCTAAGAGACACCTGCTGCACCAACATCTGCGTGTCCACGGCATCGCAACCAAAAGAATTGAAACCGAAGCCGAATTAGAAGCATCTACCTCTAGCACCTCTACACAAAACAAATCGGACTTCCAAAATAATCTTGATGAAATACAATTTGTCTGGGTCTCGGCCAAGGATGAGTTCCATAAAATGTACAAGTGCCGATACTGCTCATACGTTAATGCAATAAAATGTAAGATACCAAACCATGAAAAAATTCATTGCATCGTATTCGAAAACAATGATACCACTGTTTACAAGTGTTTGGAATGCAAATTCACTTGTGACAACCCCAGCAGGCTCGCCGAGCATTCCAAAGGTCATGGGGAAATATATGGTCGCATTTATTGTCCCGTTGAAGATGATGTACCCGATGAAGAACAAGTTACCAAATTGAGGAGGGTTATGGAACTCGAAAAATCAACAAATCCAGAAGGTTTCACAAGAGATGAAAGCACTACGCACGAAAATAGAGAGAttaaattactatatttttgtCAAAAGTGTCCAGCAAGATTTTTTGACGAAGGCGAACTTGACGGTCATGAAAAATGTCATGGTGCAACAATGCCCAATACATGTAAAACTTGTGACTTTTCAGTCGCCGAAGAAGTTGAATTAACAGCACATTTTGTTGTACACACAGATGAATATCACACAAAAACGAAGATGCTTAAATTCATTCATAACTCACATCGTTTACACCGGCAACCTGTGCTAGAACTTATTCACTGTCCTGAGACTTCAGAGATTAAATGGATATCCACTGGGCCAAGTAAAGCCGAACATATTGAAATCCCTGTAAAAAAGACAAGTGATTCAAAACACGTGCCAAAACAATACTGTTGCAGACAATGCCCAGCGAAGTTTTTCAAAAGTTCCGCGCTTACCTATCACATGGGGCTGCATGGAGGAGAAGGCGAGCATAAGTGCAAGAAGTGCAACTACGCCGTGAAAAATATTGGAAATCTAGCCAAGCATGAATTACTTCACGAAAATGAGAACAAAGCTGCAAGTTGCGACTACGAATCCGGTGACGACAtggattataaaaatattccacTGTCGGGCACAGACTTGTTCCAAAGGAAGACTGAGGCtcaaaaaagagttttaactgATAAGTTAGTTAAGCCCAACGATCATTTTCCGCCTGTCCTACAAGCCGATCCTCAATTCGGTTATCTGATGCATGGCAACCCTGAATTTATATATCCCACGTACTTGAAGAATGGACGCCAAAAAGAAAAGCGATATAAATGCCACAAGTGCCCCTCAGCGTTTGAGAAAAGAGAACAATATAAGATTCATTTATCATTGCACGGTTCCAAACAAAGATATAAATGTGAATTGTGTGATTATTCCGTAAAATATTACGCCAATTACGTTCAACATATGCGAAAACATCAAATGAACGATGAAGCCCAAGCTGAAAGGAAGAAAGGCAATGATTTCACAGAAACAGAACATCAAGAAGACGTGAAGCAAGACGACAGCAGTGATAACATTAAACTTGCAATAAAAACGATGCCAAAAGGTGCTGCCAAGAGCGACTTCCAACAGTTTTCAATAAGTGACCAACAAACGCTCAGACTGCTGCAACGGAGACGGTCAATGAATAATTCTGGAAACCTCAACTCTTCTGAAACTTCGCCGATGAAAGAACGTAAAATGCACATGTGCCTATTATGTCCCTACACTAATCAACGGCAAGATTCATTAACTAATCATTACAGGAGGCATGGTGACACCGATGTGCTGAACGGAGGTAGTCACAAGTGTTCTCATTGCGACCTAGTGGTCGTTCAGTCGCATTTCCTTCGGGAACATCTCAAGACACACTTCAACTACCACAAAACTCTTATTCCCGAATGTTTTGTGGCCAACGAAGCTGTTAGTTTTACTATTACCAAGTTGGACGAGGAAGATAGTGAGCCAGTTGATCTCAAATTAGACGTGCACAACAAGAGTTATGCATGTAATGACGAAAAAGTTTTTGTGAAAATTAAAACTGGAGAACTGTTGGTAGAATAA
Protein Sequence
MGLQYAERELVSCKSDSNDGTASDAITNRKETSQDGYNLSPTHSTDEKQQKQSRKIPRPIPQLIPLNSSTPNQKQTCSGEPPQKKFKESLPVDSDDVSAENTLLPANPLIKETAGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTSLKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSETADNENINIANSNDGVIPIHETETEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTLPEMHRGFDAEIVDDNESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPILNDHGENEFHYLDPNTAVDSTMEIDESFNDISDVMNVQFEMQPLNLQTQHIEDSYNNYIDNRGLNDMKKPKKTLWKCKKCNYKDPSKEALLEHVREHSRSDGVHDEPHKPPVKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSADSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKAMGTKSPGPEPPAPPTTTLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRIETEAELEASTSSTSTQNKSDFQNNLDEIQFVWVSAKDEFHKMYKCRYCSYVNAIKCKIPNHEKIHCIVFENNDTTVYKCLECKFTCDNPSRLAEHSKGHGEIYGRIYCPVEDDVPDEEQVTKLRRVMELEKSTNPEGFTRDESTTHENREIKLLYFCQKCPARFFDEGELDGHEKCHGATMPNTCKTCDFSVAEEVELTAHFVVHTDEYHTKTKMLKFIHNSHRLHRQPVLELIHCPETSEIKWISTGPSKAEHIEIPVKKTSDSKHVPKQYCCRQCPAKFFKSSALTYHMGLHGGEGEHKCKKCNYAVKNIGNLAKHELLHENENKAASCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGNDFTETEHQEDVKQDDSSDNIKLAIKTMPKGAAKSDFQQFSISDQQTLRLLQRRRSMNNSGNLNSSETSPMKERKMHMCLLCPYTNQRQDSLTNHYRRHGDTDVLNGGSHKCSHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTITKLDEEDSEPVDLKLDVHNKSYACNDEKVFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01231174;
90% Identity
iTF_00726922;
80% Identity
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