Basic Information

Insect: Agrotis ipsilon
Gene Symbol: -
Assembly: GCA_028554685.1
Location: CM052963.1:6447786-6452084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.17 18 7.0 3.4 2 22 182 202 181 202 0.95

2 15 0.073 7.3 8.2 2.6 1 23 296 318 296 318 0.95

3 15 0.5 51 5.6 0.3 2 23 455 476 454 476 0.96

4 15 0.00096 0.097 14.1 0.5 2 23 556 577 555 577 0.96

5 15 0.11 11 7.6 0.3 1 23 585 607 585 607 0.97

6 15 4.2 4.3e+02 2.7 2.6 1 23 643 665 643 665 0.93

7 15 0.0002 0.021 16.2 4.0 1 23 673 695 673 695 0.99

8 15 0.19 19 6.9 1.8 1 23 776 798 776 798 0.98

9 15 1.3 1.3e+02 4.3 0.2 2 19 881 898 880 902 0.93

10 15 0.0016 0.16 13.4 0.8 1 23 969 991 969 991 0.96

11 15 0.021 2.2 9.9 1.1 1 23 997 1019 997 1019 0.95

12 15 0.0057 0.57 11.7 2.6 1 23 1108 1130 1108 1130 0.97

13 15 0.00014 0.014 16.7 1.4 1 23 1136 1158 1136 1158 0.99

14 15 0.28 28 6.4 2.9 1 23 1250 1272 1250 1272 0.96

15 15 0.012 1.3 10.6 4.6 1 23 1283 1305 1283 1305 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.17	18	7.0	3.4	2	22	182	202	181	202	0.95
2	15	0.073	7.3	8.2	2.6	1	23	296	318	296	318	0.95
3	15	0.5	51	5.6	0.3	2	23	455	476	454	476	0.96
4	15	0.00096	0.097	14.1	0.5	2	23	556	577	555	577	0.96
5	15	0.11	11	7.6	0.3	1	23	585	607	585	607	0.97
6	15	4.2	4.3e+02	2.7	2.6	1	23	643	665	643	665	0.93
7	15	0.0002	0.021	16.2	4.0	1	23	673	695	673	695	0.99
8	15	0.19	19	6.9	1.8	1	23	776	798	776	798	0.98
9	15	1.3	1.3e+02	4.3	0.2	2	19	881	898	880	902	0.93
10	15	0.0016	0.16	13.4	0.8	1	23	969	991	969	991	0.96
11	15	0.021	2.2	9.9	1.1	1	23	997	1019	997	1019	0.95
12	15	0.0057	0.57	11.7	2.6	1	23	1108	1130	1108	1130	0.97
13	15	0.00014	0.014	16.7	1.4	1	23	1136	1158	1136	1158	0.99
14	15	0.28	28	6.4	2.9	1	23	1250	1272	1250	1272	0.96
15	15	0.012	1.3	10.6	4.6	1	23	1283	1305	1283	1305	0.98

Sequence Information

Coding Sequence: ATGGGTCTACAATACGCAGACAGAGAACTAGTCAGTTGCAAAAGTGATTCCAATGACGACACAGCGTCAGACGCAATCACTAACAGAAAAGAAAATTCACAAGATGGATACAACCAGCTCTCACCAACCAACAGCACAGACGAGAAGCAACAAAAACAGAGTAGAAAGATTCCCCGGCCAATACCACAACTCATACCGTTAAACTCTTCAACACCCAATCAGAAACAAACAAGCTCAGGTGAACCGCCACAGAAGAAGTTCAAAGAAGAACCCATCGACATTGATGATGTATCTGCTGAAAATACTCTTTTACCAGCAAACCCATCAATAAAAGAAACATCAGGACGAAAGAAAAACGAATCCTTCTTCGACAGGTTAAAAGAAAGACTCCTAACAGAAACAGGCGAAGAAGGCTCACTAATATGCAAGATTTGTGGATTTGAAAGTAAATGCCTATCAGAACATTCTGTACACGAGAAAAATTGTGCTCCACAAGCTAACCGGATCAATGCAAACACATCGCTTAAAAGTTTAAGTTCCACTCGGTGCCAGAACTGCAGACACAGATGTAAATCGAGCGCAGACTTGTACATTCACATGCAAACTTGCGTAAAGATCGAAAGCATTGATtctattaaaaatgaaaatagcaACGATGGAATCATTCCAATACATGAAAAAGAGACTGAACCGCATCCAATGGAAAACGTCGTTTTCGTTTGGAACAACATAAATCATGACCCTAACAAATTTGATATACCTCTAGACATAAACATAAATGATGATTCCACTCTACCAGAAATACATCGAAGTTTTGATCCTGAGATTGTCGATGAGAATGAAAGCATGAATTTGTCGCCGAGTCAAGCTATTGGAAGAAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCGTCCAGATTTCACGTTCATATAGTGGGTCACTTAAACAAGAAACCATTTGAGTGTTCTCTCTGCAAATATAAATCTAATTGGAGATGGGATATAACCAAACACATTAAATTGAAATCCGCGAGAGACCCCGAACATAATGACGCAAAAGTACTTATGACTGATGAAACAGGGAGAAGAAACTATAGCAAATATAACAAATTCTTGGCAATGCCTGTTTCAAATGAATATGGCGAAAATGAATTCCATTACCTGGATTCTAATACTGCAGTCGACAGCACGATGGAAATGGATGAATCATTTAATGATGTATCAGATGCTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAACACGGTGAAGATAATTATAACTTTATGGATATAAGAGGTCTCAATGATATGAAGAAACCCAAGAAAACATTATGGAAATGTAAAAAGTGTAATTACAAAGATCCATCAAAGGAAGCTCTTCTGGAGCACGTTCGTGAACACTCCAGATCGGATGGCATGCATGACGAAGCAAACAAACCACCCATCAAAAAACCTGAGAATAATACTCCCGACCCAGCGGACCTGGCGTACCGTTGTGGGCATTGTAATCAACTGTCTAATTGGAAACATGTCATCCAGCGCCATTGCCGATTAAAGCACGATGGAGTGATCAAAGTGATAACTACAGTCAAACCGAAACCTGACCCACCAATGAACATCAATGAGATTAACATCGATACTTGCAACAAATGCCCCTACAGAACGAGTGACAAGAAGCTTCTCATCGCGCATTTACAGCAGCATCAGCCCTCGCCAAACTCTATCTTCAAATGCTACTTCTGCCCATTCTTCGTAAAAGATGAACCAGAACTGATCCAACATTTACTACTGCATGGTATAACTGATCCAGAAGATTACATCGCTAAAGCAAGCGGAACTAAATCTCCTGGACCTGAACCCCCAGCACCAATAACTACACCATTAAACTCCACCAAACGTCACAAATGCATAGAATGTCCTTACGAAACAAATAGCAAGTCACAATTCATGTACCACGAACAGTTTCATCGACTCCCGGCCGACACACCTTACAAGTGTCCAGAATGCAACTACAGCGTATCTAAGAGACACCTCCTGCACCAACATCTGCGAGTACACGGAATAGCAACCAAAAGAACTGAAACTGAAGCCGAATTAGaagcatcaacatcaacacaAAACAAATTTGACTTCCAAATTAATCTCGATGAAATACCTTTTGTTTGGGTTTCGGCAAAGAATGAGTTCCACAAAATGTACAAGTGTCGATATTGTTCATACGTTAACGctatcaaatgtaaaataccaaacCATGAAAAAATTCATTGCATCGTATTCGAAAACAACGATACAACTATTTACAAGTGTCTGGAATGCAAATTCACATGTGATAACGCCGGCAGACTAGCAGAGCATTCCAAATCGCACGGGGAAATATATGGTCGTATTTATTGTCCTGTTGAAAATGATGTGCCAGATGAAGAACAAATCACTAAATTGAGAAAGGTTATAGACATTGAAAAGTCAACAAATCCAGAAAGTTTCTCTTCTGAAGGCACACTCGAAAATagagaattaaaaatattgtatttttgtcaAAAGTGCCCAGCAAGATTTTTTGAAGATAGCGAAGTTGACGCTCATGAAAAATGCCATGACGCATCGCTGcccaataaatgtaaaagttgtGACTTTTCAGTTTCCGAAGAAAGTGAATTAGCGGCTCATGATACGGTGCATACGGATGAATATCACACAAAAACGAAAATGCTTAAATTCGTTCACCACTCACATCCCTCGCACAGACAACCCGTGCTAGAACCTGTTCAATGTCCCAACACATCTGAGATAACATGGATATCAACTGGACCAAGTAAAGTTGAACATATCGAAAGTCCAGTGAAAAAATCAAATGATTCAAGACACGCGCCAAAACAATATAGTTGCAAACAGTGTCCAGCAAAGTTTTTCAAAAGTTCTGCGCTTACATATCACATGGGTTTACACGGAGGTGATGGCGAACATAAGTGCAAGAAGTGCAATTACGCTGTGAAGAACGTTGGAAATCTAGGAAAACACGAACTTCTtcatgaaaatgaaaacaaggCAGGCGGCGACTATGAATCAGGTGAAGatctagattttaaaaatatcccaCTGTCGGGTACAGATCTGTTCCAGAGGAAGACTGAGGCTCAGAAAAGAGTTTTAACTGATAAAGATAAGTTAGTTAAGCCGAATGATCATTTTCCGCCTGTTCTACAAGCCGACCCCCAATTCGGTTATTTGATGCATGGAAATCCAGAATTCATATATCCCACATACCTGAAAAATGGACGCCAAAAAGAAAAACGCTACAAATGCCACAAGTGTCCTTCAGCCTTTGAGAAAAGAGAAcaatataaaattcatttatcatTACACGGGTCCAAGCAAAGATATAAATGTGAGTTATGTGATTATTCCGTAAAATATTATGCTAATTACGTTCAACATATGCGAAAACATCAAATGAATGATGAAGCTCAAGccgaaagaaaaaaagataataatgatTTCACAGAATCTGAACATCAAGAAGACGTTAAGCAGGACGACAGCAGGGATAATATTAAACTCGCAATAAAAACGATGCCAAAGGGAACTGCTAAGAGCGATTTCCAACAATTCTCAATTAGCGACCAGCAAACGCTCAGGCTGCTGCAAAGGAGACGGTCTATGAACAATTCTATAAAGGACCCGAACGCTTCTGAAACTTCGCCGATCAAAGAACGTAAAATGCACATGTGTCTGTTATGTCCTTACACTAACCAACGTCAAGATTCTTTGACTAATCATTACAGAAGGCACGGAGACACCGATGTACTAAACGCAGGAAGTCATAAATGTGCCCATTGCGACCTGGTGGTTGTTCAGTCGCATTTCCTTCGGGAACATCTAAAGACACACTTCAATTACCACAAAACACTTATTCCTGAATGTTTTGTGGCTAATGAAGCTGTTAGTTTTACAATAACCAAGTTGGATGAGGAGAGTGAATCAGTTGATCTCAAACTAGACATgcagaaaaagagttttgcttgtaatgatgaaaaaatatttgtgaaaattaaaactggAGAGCTATTGGTAGAATAA
Protein Sequence: MGLQYADRELVSCKSDSNDDTASDAITNRKENSQDGYNQLSPTNSTDEKQQKQSRKIPRPIPQLIPLNSSTPNQKQTSSGEPPQKKFKEEPIDIDDVSAENTLLPANPSIKETSGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCAPQANRINANTSLKSLSSTRCQNCRHRCKSSADLYIHMQTCVKIESIDSIKNENSNDGIIPIHEKETEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTLPEIHRSFDPEIVDENESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPVSNEYGENEFHYLDSNTAVDSTMEMDESFNDVSDAMNVQFEMQPLNLQTQHGEDNYNFMDIRGLNDMKKPKKTLWKCKKCNYKDPSKEALLEHVREHSRSDGMHDEANKPPIKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSPNSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKASGTKSPGPEPPAPITTPLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRTETEAELEASTSTQNKFDFQINLDEIPFVWVSAKNEFHKMYKCRYCSYVNAIKCKIPNHEKIHCIVFENNDTTIYKCLECKFTCDNAGRLAEHSKSHGEIYGRIYCPVENDVPDEEQITKLRKVIDIEKSTNPESFSSEGTLENRELKILYFCQKCPARFFEDSEVDAHEKCHDASLPNKCKSCDFSVSEESELAAHDTVHTDEYHTKTKMLKFVHHSHPSHRQPVLEPVQCPNTSEITWISTGPSKVEHIESPVKKSNDSRHAPKQYSCKQCPAKFFKSSALTYHMGLHGGDGEHKCKKCNYAVKNVGNLGKHELLHENENKAGGDYESGEDLDFKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNNDFTESEHQEDVKQDDSRDNIKLAIKTMPKGTAKSDFQQFSISDQQTLRLLQRRRSMNNSIKDPNASETSPIKERKMHMCLLCPYTNQRQDSLTNHYRRHGDTDVLNAGSHKCAHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTITKLDEESESVDLKLDMQKKSFACNDEKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: iTF_00726922;
80% Identity: -