Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:5159851-5178479[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.86 44 4.6 0.8 1 23 54 77 54 77 0.95

2 19 0.98 50 4.4 5.1 1 23 84 107 84 107 0.97

3 19 0.00067 0.034 14.3 0.8 2 23 216 237 215 237 0.97

4 19 1.8 93 3.5 1.4 1 23 243 265 243 266 0.94

5 19 0.18 9.3 6.7 3.4 2 22 503 523 502 523 0.95

6 19 0.075 3.9 7.9 2.6 1 23 618 640 618 640 0.95

7 19 0.85 44 4.6 0.3 2 23 779 800 778 800 0.95

8 19 0.00081 0.042 14.1 0.7 2 23 880 901 879 901 0.96

9 19 0.045 2.3 8.6 0.2 1 23 909 931 909 931 0.97

10 19 0.081 4.2 7.8 3.6 1 23 967 989 967 989 0.95

11 19 0.00021 0.011 15.9 4.0 1 23 997 1019 997 1019 0.99

12 19 0.24 12 6.3 2.5 1 23 1101 1123 1101 1123 0.98

13 19 0.49 25 5.3 2.2 1 19 1179 1197 1179 1201 0.93

14 19 0.0084 0.43 10.9 0.6 1 23 1292 1314 1292 1314 0.95

15 19 0.0033 0.17 12.2 1.2 1 23 1320 1342 1320 1342 0.96

16 19 0.0059 0.3 11.4 2.6 1 23 1432 1454 1432 1454 0.97

17 19 0.00015 0.0076 16.4 1.4 1 23 1460 1482 1460 1482 0.99

18 19 0.29 15 6.0 2.9 1 23 1573 1595 1573 1595 0.96

19 19 0.0035 0.18 12.1 5.5 1 23 1605 1627 1605 1627 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.86	44	4.6	0.8	1	23	54	77	54	77	0.95
2	19	0.98	50	4.4	5.1	1	23	84	107	84	107	0.97
3	19	0.00067	0.034	14.3	0.8	2	23	216	237	215	237	0.97
4	19	1.8	93	3.5	1.4	1	23	243	265	243	266	0.94
5	19	0.18	9.3	6.7	3.4	2	22	503	523	502	523	0.95
6	19	0.075	3.9	7.9	2.6	1	23	618	640	618	640	0.95
7	19	0.85	44	4.6	0.3	2	23	779	800	778	800	0.95
8	19	0.00081	0.042	14.1	0.7	2	23	880	901	879	901	0.96
9	19	0.045	2.3	8.6	0.2	1	23	909	931	909	931	0.97
10	19	0.081	4.2	7.8	3.6	1	23	967	989	967	989	0.95
11	19	0.00021	0.011	15.9	4.0	1	23	997	1019	997	1019	0.99
12	19	0.24	12	6.3	2.5	1	23	1101	1123	1101	1123	0.98
13	19	0.49	25	5.3	2.2	1	19	1179	1197	1179	1201	0.93
14	19	0.0084	0.43	10.9	0.6	1	23	1292	1314	1292	1314	0.95
15	19	0.0033	0.17	12.2	1.2	1	23	1320	1342	1320	1342	0.96
16	19	0.0059	0.3	11.4	2.6	1	23	1432	1454	1432	1454	0.97
17	19	0.00015	0.0076	16.4	1.4	1	23	1460	1482	1460	1482	0.99
18	19	0.29	15	6.0	2.9	1	23	1573	1595	1573	1595	0.96
19	19	0.0035	0.18	12.1	5.5	1	23	1605	1627	1605	1627	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGAGCGCACAAGTCGGCGAGGTCGCGACTGTCGTGCGCCACCTTGAAGGCCGCCTCTGCGGCGACGTGTCTTCGGAGGCTTCCTCGGACGCCGCGGAAGATTCAGAATTACCACAGTGCAAGATAAGGAGGAACTATATTTGCACAAAGTGCAAGTTCTTTACGCAGAACCCGCGCGCTTATCTCATTCACACGCGTGACGCTCACTTTGTCAAACTCAAGATTTACGATTGTCCACACTGCATGTATGCTTCGAGACATCATCAGAAACTTATGAGACACGTTAAAATGGTGCACGGAGGTTCAATGACGCCATCAGCTGTTAAAATGGATTCCGAGTTATCGCCACCCTCCTACGAAAACATGGAGCAAGCAGAACGCATAGAAGACCTTTTAGAGGAAGTCGAGGACTGCGATGATTTAATGATGGAAGTGGACGATGACTCCTCGGACCGACCGGACGACGGCGATGTTGAGTGCGACAGAACGGTCGATCAAGTAGCGCCATCAGAAGTGTTGAAAACTAGAGGGAAATTTTTCTCATGCGATAAGTGCAACTATTTCACTCACATAAGAGCTAGATTTACGAAGCACGTCAAGTATCATTCGATGCCTATGATCAAGTGTACAATATGTGATTTCCGAACACCATATAAGTGGAACTTGGACCGTCACATGAAGAATCACGGTGGAAGTGGGATTTTCAATTGTTCAATGTGCAACTTTACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCACACACCGCCAGTGGGCCAATCGCTGTCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTATCGCGGAGAGCGACGCAGCGAGCGCGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCAGTCCTCGCACTCGGTCTCGGACATGGGTCTACAATACGCAGAGAGGGATATCGCGAGCTGCAAAAGCGACTCCAACGATGCCACGGCTTCAGACACAAATTCTAAAAAAGACGCATCGCAGCTGTCGCACGATGTTTACAACCAGCTATCACCTAACCTGAGCAATGAACTACAAAAACAAAGCAGGAAAATACCCAGGCCAATACCACAACTAATACCGTTAAATACTTCCACTCCCAACCAAAAACCATGTTCCGGTGAACCACCAAGCAAACGGTTCAAGGAAAATCCAACAGATGTGAACGAAAAAGACGATCTATCTAGTGATGCTATATTAATGCCTGTTAGTAGCAATCCATCCACGAAGGAAACCACAGGCCGGAAGAAAAATGAGTCATTCTTCGACCGATTAAAAGAAAGGCTGTTAACGGAAACGGGCGAAGAAGGATCTTTAATATGCAAAATCTGTGGCTTCGAAAGTAAATGCTTATCGGAACACTCAGTGCATGAGAAAAATTGCTCACCGCTAAGTAATCGGATAACTGCGAACACATCTCTTACTAGTTTAAGCTCCACTCGATGCCAAAACTGCAGACACAGATGTAAATCAAGTGCCGATTTGTACATTCACATGCAAACTTGCGGAAATAAAAAGGAAGCTGAAAATGCTGCTCAAAATCAAGACAGTAACGATACAATCATTCCAATACATGAAAAAGAGGCCGAACCACATCCGATGGAGAATGTTGTTTTCGTTTGGAACAACATAAACCAggagacaaataaatttgaagtaCCTCTAGATATAAACATCAACGATGATTCCACACTTCCAGAGTTACATAGAAGCTTTGAAGCTGAGATTGTTGACGAGAATGAGAGCATGAATTTATCGCCGAGCCAAGCGTTTGGACGAAAGGTATTTAAATGTCCACATTGTCCTTTTTTCTCTACAACTGCATCCAGATTTCACGTTCATATTGTAGGACACTTGAATAAAAAACCATTCGAGTGTTCCCTTTGCAAATATAAATCCAATTGGAGATGGGATATTACTAAACATATTAAGTTGAAGTCCGCGAGAGACCCGGAGCACAACGATGCGAAGGTGTTAATGACTGACGAAACCGGAAGGAGAAACTATAGCAAATATAACAAATTCTTAGCTATGCcggttttaaatgaaaatggtGAAAACGAGTTTCATTACTTAGATCCTAATACATCTGTAGATGGCAATATGGATATGGATGAATCTTTCAATAATATCTCAGATGTTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAGCACGGCGAGGATAAGTACGACAGTACGTTTATTGATAACAGAAGCATAAATGAGTCGAAGAAACCTAAGAAAACGTTGTGGAAATGTAAAAAGTGTAACTACAAagACCCATCAAGAGAAGCGTTGTTGGAGCATGTCCGCGAACACTCGAGGACGGATGGCGCGCCCGAAGAGCCGCACAAACCGCCTGTCAACAAGAAATCAGAAAACACCCCTGATCCAGCGGACCTGGCGTATCGCTGCGGCCATTGTAACCAATTATCTAACTGGAAACATGTCATACAGCGTCATTGTCGCTTAAAACACGATGGTGTCATAAAAGTGATAACAACAGTCAAACCAAAACCCGATCCAGCGCTGAACATAAATGACATCAGCAGCGACACATGCAACAAGTGTCCGTACAGATCAACCGACAAGAAGCAACTGATTGCTCATCTACAACAACACCAACCCTCCCCGCATTCCATATTCAAATGTTACTTCTGTCCGTACTTCGTCAAGGATGAACCAGAGCTAATCCAACATCTACTGCTCCATGGTATCACAGACCCAGAAGACTACATATCAAGAGCAATGGGCACCAAATCCCCAGTACCAGAACCGCAAGCAACGACAACACCGTCAACGGGGTCCACTAAGCGCCACAAATGCACCGAGTGCCCGTACGAAACGAACAGCAAGTCGCAATTCATGTACCACGAACAATTTCATAGATTACCGGCAGACACGCCTTATAAATGTCCTGAGTGCAACTACAGCGTTTCCAAGAGACATCTACTGCACCAACACTTGAGAGTACACGGCATTGCAACTAAACGAATGGAATCTGAGGCGGAATTAGAAGCATCTACATCGCTACAAAATAAAGCAGATTCCAAAGATTTTCACATAAATCTGGATGAAACGCCGTATGTATGGGTCTCAGCGAAAAACGAATTtcacaaaatgtataaatgtcGATACTGTTCGTACGTCAATTCCCAAAAGTGTAAGATCCCGTATCATGAAAAAATTCATTGCATTGCAAACAATGAAGCAACTCTTTACAAGTGCTTTGAATGCAAATTCACGTGTGATAATGCTGGTAGACTAGCAGAACATTCCAAATCTCATGGCGAAATATACGGCCGCATCTATTGTCCCGTGGAGGAAGATGTCCCCGACGAAGAACAAATTTCTAAATTAAGAAAAGTTATAGAAATGGAAAAATTATCAAGCGCTGACGGGTCCTTCAAAGACGAGAATTCAACAAGTGAAAATCGTGAAgtaaagatattatatttttgtaaaaagtgcCCATCGAGGTTCTTTGACGAAAGTGAATTATACGCTCATGACAAGTTTCATGATttatctaatataaataaatgcaggAGTTGTGAATTTTCAGTCCCAGAAGATGATCAATTGGCAGCTCATTTTAACGTTCACACAGATGAATATCACACTAAAACGAAGATGCTTAAATTCATTCACAATTCACATCCTTCTCACAGAGAGCCCGCCGTAGAACTCGTGCACTGTCCAGCTACTTCAGAAATCATGTGGATAGTGACCAGTCCGAGTACCGAAAGTATTGTGAAAAAGTCAAATGACGGTAAAAGTGtgccaaaacaatattattgtaaacaatGCCCAGCGAAGTTTTTCAAAGCATCTGCGCTCACTTATCACTTGGGTCTACATGGCGGTCAAGGTGAACATAAGTGTAAGAAATGTAATTACGCTGTGAAGAATATAGGAAATCTAGCCAAACATGAAATGCTGCATGAACATGAAAATAAGTCAAACAATTGCGATTACGAGTCAGGGGAAGACATGGACTACAAAAATATTCCACTATCAGGTACAGATTTATTCCAGAGAAAGACAGAAGCTCAGAAACGTGTCTTAACTGATAAAGACAAACTTGTAAAGCCAAATGATCATTTCCCACCTGTCTTACAAGCCGATCCACAGTTCGGTTATTTAATGCACGGTAACCCTGAATTTATCTATCCGACATATCTGAAAAATGGACGCCAAAAAGAAAAGCGATACAAATGCCACAAATGTCCGTCAGCGTTTGAAAAAAGAGAACAATATAAGATTCATCTATCACTACATGGATCCAAACAAAGGTATAAATGCGAGTTGTGTGATTACTCCGTCAAATATTATGCTAACTACGTCCAGCATATGAGAAAACATCAAATGAACGATGAAGCGCAGGCCGAGAGAAAGAAGGAAAACAGTGATTATGTAGAACCAGAAAATCAAGAAGATGTGAAACAAGATGATAGTTGTGATAACATCAAACTAGCAATCAAGACAATGCCCAAAGGAGCGAAGAGTGACTTCCAACAATTCTCAATAAGCGATCAGCAAACTCTCAGACTGTTGCAGAGAAGGCGTTCAATAAACAGTAACGGTAAGGACACTAGTAATCCTGAAGCATCGCCTACAAAAGAGCGTAAAATGCACATGTGCTTATTATGTCCCTACACTAATCAGCGTCAGGATTCTTTAACCAATCACTACAGAAGACACGGAGACACCGATTTTAATGCGGGAACCCATAAATGTTCCCACTGTGACCTAGTAGTCGTGCAATCACATTTCCTTCGGGAGCATTTGAGAACGCACTTCAATTTCCACAAAACACTCAACCCAGAATGTTTCGCGGCTAACGAGGATGTTAGCTTTACTATTACCAGGTTAGAAGATGACAGTCAGTCAGTTGATCTCAAGTTAAACATGCAAAACAAGAGTTTTACGTGTAatggtgaaaaaatatttgtgaaaattaaaacaggTGAACTATTGATAGAGTAA
Protein Sequence: MLQQMSSPPSAQVGEVATVVRHLEGRLCGDVSSEASSDAAEDSELPQCKIRRNYICTKCKFFTQNPRAYLIHTRDAHFVKLKIYDCPHCMYASRHHQKLMRHVKMVHGGSMTPSAVKMDSELSPPSYENMEQAERIEDLLEEVEDCDDLMMEVDDDSSDRPDDGDVECDRTVDQVAPSEVLKTRGKFFSCDKCNYFTHIRARFTKHVKYHSMPMIKCTICDFRTPYKWNLDRHMKNHGGSGIFNCSMCNFTADIKQSLTVHEMNHHTPPVGQSLSSRRRNRVGASDTVIAESDAASALLPKEEEGSGDSQSSHSVSDMGLQYAERDIASCKSDSNDATASDTNSKKDASQLSHDVYNQLSPNLSNELQKQSRKIPRPIPQLIPLNTSTPNQKPCSGEPPSKRFKENPTDVNEKDDLSSDAILMPVSSNPSTKETTGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPLSNRITANTSLTSLSSTRCQNCRHRCKSSADLYIHMQTCGNKKEAENAAQNQDSNDTIIPIHEKEAEPHPMENVVFVWNNINQETNKFEVPLDININDDSTLPELHRSFEAEIVDENESMNLSPSQAFGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTSVDGNMDMDESFNNISDVMNVQFEMQPLNLQTQHGEDKYDSTFIDNRSINESKKPKKTLWKCKKCNYKDPSREALLEHVREHSRTDGAPEEPHKPPVNKKSENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPALNINDISSDTCNKCPYRSTDKKQLIAHLQQHQPSPHSIFKCYFCPYFVKDEPELIQHLLLHGITDPEDYISRAMGTKSPVPEPQATTTPSTGSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRMESEAELEASTSLQNKADSKDFHINLDETPYVWVSAKNEFHKMYKCRYCSYVNSQKCKIPYHEKIHCIANNEATLYKCFECKFTCDNAGRLAEHSKSHGEIYGRIYCPVEEDVPDEEQISKLRKVIEMEKLSSADGSFKDENSTSENREVKILYFCKKCPSRFFDESELYAHDKFHDLSNINKCRSCEFSVPEDDQLAAHFNVHTDEYHTKTKMLKFIHNSHPSHREPAVELVHCPATSEIMWIVTSPSTESIVKKSNDGKSVPKQYYCKQCPAKFFKASALTYHLGLHGGQGEHKCKKCNYAVKNIGNLAKHEMLHEHENKSNNCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKENSDYVEPENQEDVKQDDSCDNIKLAIKTMPKGAKSDFQQFSISDQQTLRLLQRRRSINSNGKDTSNPEASPTKERKMHMCLLCPYTNQRQDSLTNHYRRHGDTDFNAGTHKCSHCDLVVVQSHFLREHLRTHFNFHKTLNPECFAANEDVSFTITRLEDDSQSVDLKLNMQNKSFTCNGEKIFVKIKTGELLIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: -
80% Identity: -