Ogot060560.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459062.1:4848765-4857113[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8 7.5e+02 3.0 0.9 1 23 54 77 54 77 0.94 2 20 0.1 20 7.9 4.1 1 23 84 107 84 107 0.97 3 20 6 1.2e+03 2.3 4.0 1 23 188 210 188 210 0.96 4 20 0.002 0.41 13.2 1.0 2 23 216 237 215 237 0.97 5 20 2.5 4.9e+02 3.5 1.4 1 23 243 265 243 266 0.94 6 20 0.25 49 6.7 3.4 2 22 494 514 493 514 0.95 7 20 0.1 20 7.9 2.6 1 23 611 633 611 633 0.95 8 20 2.3 4.5e+02 3.6 0.3 2 23 771 792 770 792 0.95 9 20 0.0014 0.27 13.8 0.5 2 23 872 893 871 893 0.96 10 20 0.16 31 7.3 0.3 1 23 901 923 901 923 0.97 11 20 7.8 1.6e+03 2.0 2.4 1 23 960 982 960 982 0.92 12 20 0.00029 0.057 15.9 4.0 1 23 990 1012 990 1012 0.99 13 20 0.48 96 5.8 1.9 1 23 1096 1118 1096 1118 0.97 14 20 0.031 6.1 9.5 0.3 1 23 1174 1196 1174 1196 0.97 15 20 0.044 8.8 9.0 2.5 1 23 1295 1317 1295 1317 0.95 16 20 0.0065 1.3 11.7 1.1 1 23 1323 1345 1323 1345 0.96 17 20 0.008 1.6 11.4 2.6 1 23 1435 1457 1435 1457 0.97 18 20 0.0002 0.04 16.4 1.4 1 23 1463 1485 1463 1485 0.99 19 20 0.4 79 6.0 2.9 1 23 1576 1598 1576 1598 0.96 20 20 0.012 2.3 10.8 5.6 1 23 1609 1631 1609 1631 0.98
Sequence Information
- Coding Sequence
- ATGCTACAGCAGATGTCCTCGCCGCCGCGCGCACAAGTCGGCGAGGTCGCGACTATCGTGCGCCACCTTGAAGGCCGCGTCTACGGCGACGTGTCTTCGGAGGCTTCCTCGGACGCCGCCGAAGATTTTGAATTACCACAGTGCAAGATAAGGAGGAATTATAACTGCACCAAGTGCACGTTCTATACGCAGAACCCGCGCGCTTATCTCGTACACACGCGTGACGCTCACTTCGTCAGACTCAAGATTTATGATTGTCCACACTGTGTTTACGCTTCGAGACATCATCAAAAACTTATAAGACACGTCAAAATGGTTCACGGAGCATCAAAACCTACtgcaacgactgtcaaagtggAAGAACTATCACCTCCCCCCAACGATAACATGGAGCCAGCAGAGCGCATCGAAGACATGCTCGAGGAAGTCGAGGACTGCGAGGAGATGATGATGGAAGTTGATGAGGACTCCATGGACCAACCTGATGATGTCGACGGCGACTGCGACAGAAGTGTATCGCCCTATCGTAGGGCACGTCTGTCAAAAGCTAAAGGCAAATTCTTCTCATGCGATAAGTGTAACTATGTCACCCATATAAGAGCTAGATTCACAAAGCACGTCAAGTATCATTCGATGCCTATGATCAAGTGTACAATGTGTGATTTTCGAACACCGTACAAGTGGAATTTGGACCGTCACATGAAGAACCACGGTGGCAGTGGAAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCACACACCGGCAGCGGGCCAATCGTTGCCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTATCGCGGAGTTCGACGCAGCGAGCGCGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCGATCCTCACACTCGGTCTCGGACATGGGGCTCCAATACGCAGAGAGAGAACTAGTCAGTTGCAAAAGTGATTCCAACGACGGTAcaactgatgcaatcaccaatCGAAAGGAGACTTCGCAAGATGGATACCACCTTTCACCAACCCACAGCGCAGACGAGAAGCAAAAACAAAGCAGAAAGATTCCCAGACCAATACCACAACTCATACCGTTAAATTCATCAACACCTAACCAAAAACAAACGTGCTCTGGTGAACCACCACAGAAAAAGTTTAAGGAATCCGTCGACAGCGATGAATTTTCTGCTGAAAATAGCCTCTTACCAGCAAACCCAGCGATAAAAGAGACAGGTCGAAAGAAAAATGAATCATTTTTCGACAGATTAAAAGAAAGACTGCTAACAGAAACAGGCGAAGAAGGTTCACTGATATGTAAGATCTGTGGATTTGAAAGTAAATGCTTATCAGAACATTCTGTACACGAGAAAAACTGTTCTCCACAAACGAATCGCATCAATGCAAACACGTCGGTTAAAAGTTTAAGTTCTACTCGATGTCAGAATTGTAGACACAGGTGTAAGTCTAGTGCAGACTTGTACATTCACATGCAAACTTGCGGTAAAAGCGAAACGGCAGACCATGAGACCACTATAAAAATTGACAACAGTAATGATGGGGTCATTCCAATCCATGAAACAGAGACTGAGCCGCATCCAATGGAAAACGTCGTTTTCGTTTGGAACAATATTAATCATGACCCTAACAAGTTTGATATACCTCTagacataaatataaatgatgaTTCCACTCAACCAGAAATGCATCGAAGTTTTGAAGCTGAGATTGTTGATGACAATGAAAGCATGAATCTATCGCCGAGTCAAGCTATCGGAAGGAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCATCCAGATTTCACGTTCATATCGTGGGTCACTTAAACAAGAAACCGTTTGAGTGTTCCCTCtgcaaatataaatctaattgGAGATGGGATATAACCAAACACATTAAATTGAAATCCGCGAGGGATCCCGAGCATAATGAAGCAAAAGTGCTTATGACTGATGAAACAGGAAGACGAAACTACAGCAAATACAATAAATTCTTAGCAATGcctgttttaaatgaaaatggcgAAAATGAGTTCCATTACTTGGATCCTAACACTGCAGTCGATAGCACGATGGAAATAGATGAAGCACTTAATGATATGTCAGACGTAATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACGCAACACATTGAAGAAAATTATAACAGCTATATTGATAATAGAGGTCTAAACGATATGAAGAAGCCCAAGAAAACATTATGGAAATGTAAAAGGTGCAATTACAAAGATCCCTCAAAAGAAGCGCTTTTAGAGCATGTTCGTGAACACTCCAGAGCGGAAGGCGTCCATGACGAGACAATCAAACCCCTTCTTAAGAAACCTGAAAACAATACTCCTGACCCAGCAGATCTGGCGTATCGTTGTGGGCATTGCAATCAGCTTTCTAATTGGAAACATGTCATCCAGcGCCATTGCCGATTAAAACACGAAGGAATTATCAAAGTGATAACTACAGTTAAACCGAAACCTGACCCACCAATGAACATCAATGAGATCAATATTGATACTTGCAACAAATGTCCGTACAGAACGAGTGACAAAAAGCTACTCATCGCTCATTTACAACAGCATCAGCCCTCGGCGAATTCTATTTTCAAGTGCTACTTCTGTCCGTTCTTCGTAAAGGATGAGCCAGAATTAATTCAACATCTACTCCTGCACGGCATCACTGACCCAGAAGATTACATCGCAAAAGCAATGGGAACTAAATCTCCAGGACCACCTGAACCGCAAACTCCTGTCACCACGTCATTAAACTCCACCAAGCGTCACAAATGCATAGAATGTCCATACGAAACAAACAGCAAGTCACAATACATGTATCACGAACAATTTCATCGACTGCCGGCGGATACGCCTTACAAATGTCCAGAATGCAACTACAGCGTTTCTAAGAGGCACTTGCTGCACCAGCATCTGCGTGTCCACGGTATCGCCACCAAGAGAACTGAAACCGAGGCCGAATTAGAGGCATCAACATCTGCACCAAACAAGACGGATAAAACGGACTTCCATATAAATCTTGATGAAATACCATTTGTCTGGGTTTCAGCCAAGAACGAGTTCCACAAAATGTACAAATGCCGATACTGTTCATACGTTAATGCTATCAAATGTAAAATACCAAATCATGAAAAAATTCATTGCATCGCTTTCGAAAACAGTGATACAACTATTTACAAATGTTTGGAATGCAAATTCACATGTGATAACGCCGGCAGACTCGCCGAACATTCTAAAAATCATGCTGAAATATATGGGCGCATTTATTGTCCCGTTGAATATGATGTGCCCGATGAGGAACAAATCACAAAATTGAGAAAGGttatagaaattgaaaaatcagcaAATCCAGAAAGTTTCTCAAGAGATGAAAGCACCACGCACGAAAAtagagaaataaaattattattcttttgTCAAAAATGCCCAGCGAGATTTTTTGATGACGCTGACCTTGAGGTTCATGAAAAACGTCATAGCAGTGATGAAACATTGACCAACAAATGTAAGAGTTGTGACTTTTCAGTTAACGATGAATTTGAAATAGAATTAGCGTCACATTTTGCTGTGCACACAGAtgaatatcacacaaaaacgaAGATGCTTAAATTTGTCCACAACTCACATCCTTTGCACAGGCCACCCGTGCTAGAGCTTGTTCACTGTCCAAAGACTTCACAGATTACCTGGATATCCACTGGCCCAAGTAAAGCTGAACATATAGAAACCCCTGTGAAgaaaatgagtgattctagaCACGTGCCAAAACAATATTGTTGTAGACAATGTCCTGCGAAGTTTTTCAAAAGTTCCGCTCTTACCTATCACATGGGGCTGCATGGAGGTGAAGGCGAACATAAGTGCAAGAAGTGCAACTACGCCGTGAAGAACATAGGAAATCTAGCCAAACATGAACTACTTCACGAAAATGAGAACAAAGGTACAAGTTGCGACTATGAATCTGGTGACGATatggattataaaaatattccaATATCGGGCACAGATTTGTTCCAGAGGAAGACTGAGGCTCAGAAAAGAGTTTTAACTGATAAAGATAAGTTAGTTAAGCCGAACGATCATTTCCCGCCTGTCCTACAAGCCGATCCCCAATTCGGTTACCTAATGCATGGTAATCCTGAATTCATTTATCCCACGTATCTGAAAAATGgacgtcaaaaagaaaaacgaTACAAATGCCACAAGTGTCCCTCAGCTTTTGAGAAAAGAGAGCAATATAAGATTCATTTATCATTGCACGGCTCCAAGCAAAGATATAAATGTGAGTTGTGCGATTATTCAGTAAAATATTACGCCAATTACGTTCAACATATGCGAAAACATCAAATGAACGATGAAGCTCAAGCTGAAAGGAAGAAAGATAACAATGATTTTACAGAATCAGAACAACAAGAAGACGTAAAGCAAGACGATAGCAGTGATAACATTAAACTTGCAATAAAAACGATGCCAAAAGGAGCTGCAAAGAGCGACTTTCAGCAATTCTCAATTAGCGATCAACAAACGCTGAGACTGCTACAGAGGAGACGGTCAATGAATAATTCTGGAAACCAAAACTCTTCTGAAACTTCGCCGATCAAAGAGCGTAAAATGCACATGTGTCTTTTATGTCCTTACACCAATCAACGTCAAGATTCTTTGACCAATCATTACAGGAGGCACGGTGACACAGACGTCCTGAGCGGAGGTAGTCATAAATGTTCACATTGCGACCTAGTGGTTGTTCAGTCGCATTTCCTTCGGGAACATCTCAAGACACACTTCAACTACCACAAAACTCTCATTCCCGAATGTTTTGTGGCTAGTGAAGCTGTTAGTTTTACTATAACCAAGTTGGATGAAGAAAGTGAATCAGCTGATCTCAAATTAGACATGCAGAACAAGAGTTATGCATGTAACGATGAAAAGATATTTGTGAAAATTAAAACAGGAGAGCTAATGGTGGAATAA
- Protein Sequence
- MLQQMSSPPRAQVGEVATIVRHLEGRVYGDVSSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHGASKPTATTVKVEELSPPPNDNMEPAERIEDMLEEVEDCEEMMMEVDEDSMDQPDDVDGDCDRSVSPYRRARLSKAKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPAAGQSLPSRRRNRVGASDTVIAEFDAASALLPKEEEGSGDSRSSHSVSDMGLQYAERELVSCKSDSNDGTTDAITNRKETSQDGYHLSPTHSADEKQKQSRKIPRPIPQLIPLNSSTPNQKQTCSGEPPQKKFKESVDSDEFSAENSLLPANPAIKETGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTSVKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSETADHETTIKIDNSNDGVIPIHETETEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTQPEMHRSFEAEIVDDNESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTAVDSTMEIDEALNDMSDVMNVQFEMQPLNLQTQHIEENYNSYIDNRGLNDMKKPKKTLWKCKRCNYKDPSKEALLEHVREHSRAEGVHDETIKPLLKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSANSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKAMGTKSPGPPEPQTPVTTSLNSTKRHKCIECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRTETEAELEASTSAPNKTDKTDFHINLDEIPFVWVSAKNEFHKMYKCRYCSYVNAIKCKIPNHEKIHCIAFENSDTTIYKCLECKFTCDNAGRLAEHSKNHAEIYGRIYCPVEYDVPDEEQITKLRKVIEIEKSANPESFSRDESTTHENREIKLLFFCQKCPARFFDDADLEVHEKRHSSDETLTNKCKSCDFSVNDEFEIELASHFAVHTDEYHTKTKMLKFVHNSHPLHRPPVLELVHCPKTSQITWISTGPSKAEHIETPVKKMSDSRHVPKQYCCRQCPAKFFKSSALTYHMGLHGGEGEHKCKKCNYAVKNIGNLAKHELLHENENKGTSCDYESGDDMDYKNIPISGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNNDFTESEQQEDVKQDDSSDNIKLAIKTMPKGAAKSDFQQFSISDQQTLRLLQRRRSMNNSGNQNSSETSPIKERKMHMCLLCPYTNQRQDSLTNHYRRHGDTDVLSGGSHKCSHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVASEAVSFTITKLDEESESADLKLDMQNKSYACNDEKIFVKIKTGELMVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01231174;
- 90% Identity
- iTF_00726922;
- 80% Identity
- -