Hass007647.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Helicoverpa assulta
Gene Symbol
-
Assembly
GCA_029618815.1
Location
CAWLCW010000008.1:5159647-5163948[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.16 14 7.2 3.4 2 22 182 202 181 202 0.95
2 15 0.076 6.7 8.2 2.6 1 23 299 321 299 321 0.95
3 15 0.53 47 5.6 0.3 2 23 458 479 457 479 0.96
4 15 0.001 0.088 14.1 0.5 2 23 559 580 558 580 0.96
5 15 0.3 26 6.3 1.2 1 23 588 610 588 610 0.97
6 15 4.4 3.9e+02 2.7 2.6 1 23 646 668 646 668 0.93
7 15 0.00021 0.019 16.2 4.0 1 23 676 698 676 698 0.99
8 15 0.093 8.2 7.9 1.9 1 23 777 799 777 799 0.99
9 15 0.045 4 8.9 0.1 2 23 884 905 883 905 0.96
10 15 0.033 2.9 9.4 2.5 1 23 972 994 972 994 0.95
11 15 0.0029 0.26 12.6 1.7 1 23 1000 1022 1000 1022 0.96
12 15 0.0059 0.53 11.7 2.6 1 23 1112 1134 1112 1134 0.97
13 15 0.00015 0.013 16.7 1.4 1 23 1140 1162 1140 1162 0.99
14 15 0.58 51 5.4 2.4 1 23 1254 1276 1254 1276 0.96
15 15 0.0024 0.22 12.9 1.6 2 23 1288 1309 1288 1309 0.98

Sequence Information

Coding Sequence
ATGGGTCTACAATACGCAGAGAGAGAACTCGTCGGATGCAAAAGCGACTCCAATGACGCTGCTGCTTCTGACACCATTGCCAAAAAAGAAACTTCACAAGATGGCTTCCAACTGTCGCCTACTCACAGCTCAGATGAGAAGACGCAGAAACAAAGTAGAAAAGTTCCCAGGCCAATACCACAACTCATACCACTAAATTCTTCTACACCTAACCAGAAACAAACATGTTCTGGTGAACCGCCCAGCAAAAAGTTCAAGGAATCGTTACAAGCAGAAATTGTTGACGATGTTTCGGGCGATAACACCCTCGTCCCTCAAAACCATTCAATCAAAGAAACTACAGGTCGAAAGAAGAATGAATCATTCTTCGACAGACTTAAAGAAAGACTGTTAACAGAAACAGGAGAAGAAGGCTCGCTTATTTGTAAGAACTGTGGATTTGAAAGCAAATGTTTATCAGAACATTCTGTACACGAGAAAAATTGTTCACCTCAAACTAACAGGGTCAATGCAAATACGTCACTCAAAAGTTTAAGTTCAACTCGATGTCAGAACTGCAGACATCGCTGTAAGTCCAGCGCAGATTTGTACGTCCACATGCAAACTTGCGGAAAGAGCGAGAATATGGACGATGAAGATACTATTAAAAATCAAGACAGTAATGACGGTGTCATTCCAATACATGAAAAAGAGACTGAACCTCATCCAATGGAAAACGTTGTTTTTGTTTGGAATAATATTAATCAAGACGCCAACAAGTTCGATATGCCTCTAGACATAAACATAAATGACGATTGCACACTACCAGAGGTACACAGAAGTTTCGATCACGAGATAACTGACGACAACGAAAGTATGAATTTGTCACCAAGTCAAGCTATCGGAAGAAAGGTATTCAAATGTCCACATTGTCCATTTTTCTCCACAACAGCATCCAGGTTTCACGTTCACATTGTTGGTCACTTAAATAAGAAACCATTTGAATGTTCACTCTGCAAATATAAATCTAATTGGAGATGGGATATAACCAAACACATAAAACTGAAATCGGCAAGAGATCCAGAACATAACGAGGCAAAAGTTCTAATGACAGATGAAACTGGAAGAAGAAACTATAGCAAATACAACAAATTCTTAGCGATGCCCGTACTAAATGACAACGGTGAAAACGAGTTCCATTACCTGGATCCTAATACCGCAGTCGACAGCACTATGGAAATCGATGAGTCATTTAATGATATATCGGACGTTATGAACGTACAATTTGAAATGCAACCACTTAACTTACAGACACAACACAGTGACGATAAGTACGATTATATGGATAACAGAGGTCTTAATGACATAAAGAAGCCGAAGAAAACATTATGGAAATGTAAAAAATGTAACTACAAAGATCCTTCAAAAGAAGCCCTCTTAGAGCATGTCCGTGAACACTCCAAATCGGACGGTCACCATGACGAGTCAAGCAAACAACCTCCCAAGAAAGCTGAAAACAATACTCCCGACCCAGCTGACCTGGCATATCGCTGTGGACACTGTAACCAGTTATCAAATTGGAAACATGTCATCCAGCGTCATTGCCGATTAAAACACGATGGAGTCATAAAAGTAATAACTACAGTCAAACCGAAACCTGACCCGCCAATGAACATTAATGAGATCAACATTGATACATGCAACAAGTGTCCGTACAGAACAAGTGATAAGAAGCTTCTTATCGCTCACTTGCAACAGCACCAGCCCTCGGCTAATTCTATCTTCAAATGCTACTTCTGCCCCTTCTTCGTCAAGGATGAACCAGAGTTGATCCAACATCTACATCTTCACGGTATCTCTGACCCAGAGGACTACATCGCAAAGGCAATGGGCACCAAATCTCCAGGACCCGAGCAGCCAGCACCTGTAACTCAATCATTCAACTCCACGAAACGTCACAAGTGTATAGAGTGCCCATATGAAACAAACAGCAAGTCGCAGTTCATGTACCACGAACAATTTCATCGACTACCTGCTGACACTCCATACAAATGCCCGGAATGCAATTACAGCGTATCAAAAAGACACTTGCTACACCAACATCTACGAGTTCACGGAATCGCAACCAAAAGAATTGAGTCAGAAGCAGAACTAGAAAACAAGACGGAGCTAAAAATTGACTTCAGTATTAACCTTGATGAAATCCCATACGTTTGGGTGTCAGCAAAGAACGAATTTCATAAAATGTACAAGTGCCGGTACTGCTCATACGttaatgctataaaatgtaaaataccaAATCATGAAAAAATCCATTACACCGTATTCGAAAATAATGACACAACCATTTATAAATGTTTAGAATGCAAATTCACATGTGATAATGCCGGCAGGCTGGCTGAACATTCTAAAACGCATGGCGAAATATATGGTCGCATTTATTGTCCCGTGGAATTCGATGTGCCCGATGAAGAACAAATCTCTAAGCTGCGAAAGGTTATAGAAATAGAAAAATCGGCGAATCCAGAAAGTTTTTCTAGAGATGATAGCTCTACACTTGAGAACAGGGAAATAAAACTactatatttttgtgtaaaatgccCCGCAAGGTTTTTAGAATACAGTGAACTAGAGGATCATGAAAAATGTCATGTTGCATCACTTCCGAATAAATGTAAAAGTTGTGACTATTCAGTATCCGAAGAAAGTGAATTAAGTGCACATGCTATCGTTCATACCGATGAATATAACACAAAAACGAAGATGCTAAAATTTATTCGCCATTCGCATCCCTCGCACAGACAACCCATTTTAGAACTTGTCCACTGTCCAACAACATCTGAGATTACGTGGATAGCTACAGGTCCATCCAAAATTGAAACTGTTGACGCTCCTGTGAAGAAAATTAATGAGTCGAAAACCGTGCCAAAGCAGTACTGTTGCAGACAATGTCCTGCTAAGTTTTTCAAAAGTTCGGCGTTAACATATCATATGGGGCTACATGGTGGTGAAGGAGAGCATAAGTGCAAGAAATGTAACTATTCTGTGAAGAATATTGGTAACTTAGCCAAACATGAATTATTACACGAAAATGAGAACAAATCTGCAAGTTGTGATTACGAATCTGGTGAAGATATGGactataaaaatattccttTGTCAGGCACAGATTTGTTCCAGAGAAAGACTGAGGCTCAGAAAAGAGTTTTGACCGATAAAGATAAGTTAGTTAAACCGAATGATCATTTTCCGCCTGTCCTGCAAGCTGATCCTCAATTCGGTTATTTAATGCACGGTAATCCTGAATTTATATATCCCACGTACCTAAAGAATGGTCGTCAAAAAGAAAAACGATATAAATGCCACAAGTGTCCTTCAGCATTTGAAAAACGAGAACAATATAAAATCCATTTATCATTGCACGGCTCCAAGCAAAGATACAAGTGTGAGTTATGTGATTATTCCGTAAAATATTATGCCAATTACGTTCAACACATGAGAAAACATCAAATGAACGATGAAGCTCAAGCTGAAAGAAAGAAGGGCAGTACTGATTATATAGAATCTGAAAACCAAGAAGACATCAAACATGATGACAGTAGTGATAACATTAAACTTGCAATTAAGACTATGCCGAAAGGGGCGCCTAAAAGCGACTTCCAACAATTTTCCATTAGCGACCAGCAAACTCTTCGATTGCTTCAGCGAAGGCGATCGATGAACAATTCTGGGAAAGACTTAAATACATCAGAAACCTCGCCGATCAAAGAACGTAAATTGCACATGTGTGTACTATGCCCGTACACTAACCAACGTCAAGACTCATTAAGTAATCATTACAGAAGACACGGTGAGTGCGATGATCTGCACGCTGGAAGCCGCAAATGTTCTTATTGTGACCTAGTGGTCGTGCAGTCACACTTCCTCCGCGAACATCTCAAGACTCACTTCAACTACCACAAGGCTCAAACTCCTGAATGTTTTGTGGCTAACCAAGATGTTAGTTTTACCATTTCCAAGTTAGAAGAAGGCAGTGAATCAGTTGATCTCAAATTAGACATGCAAAACAAGAGTTTTGCTTGTAATGATGAAAAgatatttgttaaaattaaaactggaTTATTGgtagaataa
Protein Sequence
MGLQYAERELVGCKSDSNDAAASDTIAKKETSQDGFQLSPTHSSDEKTQKQSRKVPRPIPQLIPLNSSTPNQKQTCSGEPPSKKFKESLQAEIVDDVSGDNTLVPQNHSIKETTGRKKNESFFDRLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCSPQTNRVNANTSLKSLSSTRCQNCRHRCKSSADLYVHMQTCGKSENMDDEDTIKNQDSNDGVIPIHEKETEPHPMENVVFVWNNINQDANKFDMPLDININDDCTLPEVHRSFDHEITDDNESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNDNGENEFHYLDPNTAVDSTMEIDESFNDISDVMNVQFEMQPLNLQTQHSDDKYDYMDNRGLNDIKKPKKTLWKCKKCNYKDPSKEALLEHVREHSKSDGHHDESSKQPPKKAENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSANSIFKCYFCPFFVKDEPELIQHLHLHGISDPEDYIAKAMGTKSPGPEQPAPVTQSFNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRIESEAELENKTELKIDFSINLDEIPYVWVSAKNEFHKMYKCRYCSYVNAIKCKIPNHEKIHYTVFENNDTTIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEFDVPDEEQISKLRKVIEIEKSANPESFSRDDSSTLENREIKLLYFCVKCPARFLEYSELEDHEKCHVASLPNKCKSCDYSVSEESELSAHAIVHTDEYNTKTKMLKFIRHSHPSHRQPILELVHCPTTSEITWIATGPSKIETVDAPVKKINESKTVPKQYCCRQCPAKFFKSSALTYHMGLHGGEGEHKCKKCNYSVKNIGNLAKHELLHENENKSASCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGSTDYIESENQEDIKHDDSSDNIKLAIKTMPKGAPKSDFQQFSISDQQTLRLLQRRRSMNNSGKDLNTSETSPIKERKLHMCVLCPYTNQRQDSLSNHYRRHGECDDLHAGSRKCSYCDLVVVQSHFLREHLKTHFNYHKAQTPECFVANQDVSFTISKLEEGSESVDLKLDMQNKSFACNDEKIFVKIKTGLLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01231174;
90% Identity
iTF_00786392;
80% Identity
-