Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052091.1:11679701-11690047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.1 2e+02 3.0 0.9 1 23 54 77 54 77 0.94

2 20 0.086 5.5 7.9 4.1 1 23 84 107 84 107 0.97

3 20 5 3.2e+02 2.3 4.0 1 23 195 217 195 217 0.96

4 20 0.0017 0.11 13.2 1.0 2 23 223 244 222 244 0.97

5 20 2.1 1.3e+02 3.5 1.4 1 23 250 272 250 273 0.94

6 20 0.21 13 6.7 3.4 2 22 506 526 505 526 0.95

7 20 0.086 5.5 7.9 2.6 1 23 623 645 623 645 0.95

8 20 0.59 38 5.2 0.3 2 23 782 803 781 803 0.96

9 20 0.0011 0.072 13.8 0.5 2 23 884 905 883 905 0.96

10 20 0.13 8.4 7.3 0.3 1 23 913 935 913 935 0.97

11 20 5 3.2e+02 2.3 2.6 1 23 971 993 971 993 0.93

12 20 0.00024 0.015 15.9 4.0 1 23 1001 1023 1001 1023 0.99

13 20 1.5 96 4.0 2.2 1 23 1105 1127 1105 1127 0.97

14 20 2.4 1.5e+02 3.3 2.4 1 20 1183 1202 1183 1205 0.92

15 20 0.063 4 8.3 2.3 1 23 1299 1321 1299 1321 0.93

16 20 0.014 0.91 10.3 1.1 1 23 1327 1349 1327 1349 0.96

17 20 0.0067 0.43 11.4 2.6 1 23 1439 1461 1439 1461 0.97

18 20 0.00017 0.011 16.4 1.4 1 23 1467 1489 1467 1489 0.99

19 20 0.33 21 6.0 2.8 1 23 1580 1602 1580 1602 0.96

20 20 0.0098 0.62 10.8 5.6 1 23 1613 1635 1613 1635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.1	2e+02	3.0	0.9	1	23	54	77	54	77	0.94
2	20	0.086	5.5	7.9	4.1	1	23	84	107	84	107	0.97
3	20	5	3.2e+02	2.3	4.0	1	23	195	217	195	217	0.96
4	20	0.0017	0.11	13.2	1.0	2	23	223	244	222	244	0.97
5	20	2.1	1.3e+02	3.5	1.4	1	23	250	272	250	273	0.94
6	20	0.21	13	6.7	3.4	2	22	506	526	505	526	0.95
7	20	0.086	5.5	7.9	2.6	1	23	623	645	623	645	0.95
8	20	0.59	38	5.2	0.3	2	23	782	803	781	803	0.96
9	20	0.0011	0.072	13.8	0.5	2	23	884	905	883	905	0.96
10	20	0.13	8.4	7.3	0.3	1	23	913	935	913	935	0.97
11	20	5	3.2e+02	2.3	2.6	1	23	971	993	971	993	0.93
12	20	0.00024	0.015	15.9	4.0	1	23	1001	1023	1001	1023	0.99
13	20	1.5	96	4.0	2.2	1	23	1105	1127	1105	1127	0.97
14	20	2.4	1.5e+02	3.3	2.4	1	20	1183	1202	1183	1205	0.92
15	20	0.063	4	8.3	2.3	1	23	1299	1321	1299	1321	0.93
16	20	0.014	0.91	10.3	1.1	1	23	1327	1349	1327	1349	0.96
17	20	0.0067	0.43	11.4	2.6	1	23	1439	1461	1439	1461	0.97
18	20	0.00017	0.011	16.4	1.4	1	23	1467	1489	1467	1489	0.99
19	20	0.33	21	6.0	2.8	1	23	1580	1602	1580	1602	0.96
20	20	0.0098	0.62	10.8	5.6	1	23	1613	1635	1613	1635	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGAGCGCACAAGCCGGCGAGGTCGCGACTATCGTGCGCCACCTTGAAGGCCGAGTCTGCGGCGACGTGTCTTCGGAAGCTTCCTCAGATGCCGCCGAGGATTTTGAATTACCACAGTGCAAGATAAGGAGGAATTATAATTGCACCAAGTGCACGTTCTATACGCAGAATCCGCGCGCTTATCTCGTCCACACGCGTGACGCTCACTTCGTTAGACTCAAGATTTACGATTGTCCACACTGTGTTTATGCGTCGAGACACCATCAGAAACTTATAAGACACGTCAAAATGGTTCATGGAGCTAAGCCAACTTCTACAGCTGTTAAAGTGGATGCAGAGTTATCACCTCCCTCCTATGACAACATGGAGCCAGCAGAGCGCATTGAAGACATGGTGGAGGAAGTGGAGGACTGCGAGGATATGATGATGGAAGTAGACGAGGACTCCATGGACCAGCCTGATGACATCGACGTCGACTGCGATAGAAGTGCTGAGTATGCAGCTGATTCAATGCCCTACTATAAGAGGGCAAATATGGAAAAATCTAAGGGTAAATTCTTCTCATGCGATAAGTGCAACTATGTCACCCACATAAGAGCTAGATTCACAAAGCACGTGAAGTATCATTCGATGCCTATGATCAAGTGTACAATGTGTGATTTCCGAACGCCATACAAGTGGAACTTGGACCGTCACATGAAGAACCACGGCGGCACTGGAAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCACACACCGCCAGCGGGCCAATCGCTGTCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTACCGCGGAGTTCGACGCAGCGAGCGCGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCGGTCCTCACACTCGGTGTCGGACATGGGTCTCCAATACGCGGATAGAGAACTGGTCAGTTGCAAAAGTGATTCCAATGATGGTACAGCTTCTGACGCGATTAGCAGGAAAGAGACTTCGCAAGATGGATACAACCAGCTCTCACCAACCAACAGCTCAGATGAGAAGCAACAAAAACAAAACAGAAAGGTTCCCAGGCCTATACCACAACTCATACCGTTAAACTCTTCAACACCCAATCAAAAACAAACATGCTCTGGTGAACCGCCACAGAAGAAATTCAAGGAATCTCCACGTGCCGACATTGACGATGAATCTGCTGAAAATACTCTACTACCAGCTAATCCATTAATAAAAGAGACTGCGGGTCGAAAGAAAAATGAATCGTTCTTCGACAGATTGAAAGAAAGACTGTTAACAGAAACTGGCGAGGAAGGCTCCCTCATATGCAAGATCTGTGGCTTCGAAAGCAAGTGCTTATCAGAACATTCCGTACACGAGAAGACCTGTTCCCCACAAACGAACCGGATCAACGCAAACACGTCTCTTAAAAGTCTAAGTTCTACTCGATGTCAAAATTGCAGACATAGGTGTAAATCTAGTGCAGACTTGTACATCCATATGCAAACATGCGGGAAGAGCGAAAATATGGAAGACGAGAACGCAATTAAAAATGAACATAGCAACGATGGAGTCTATCCAGTCCATGAAAAAGAAGCAGAACCGCATCCAATGGAAAACGTCGTGTTCGTTTGGAACAACATTAATCACGATCCAAACAAGTTTGATATACCTTTAGACATTAATATAAATGATGATTCCACTCTACCAGAAATACATCGAGGTTTTGATCCCGAGATTATTGATGATAATGAAAGCATGAATTTGTCGCCGAGTCAAGCCATTGGAAGGAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCGTCCAGATTTCACGTTCATATCGTGGGTCACTTGAACAAGAAACCGTTCGAGTGTTCCCTCTGCAAATATAAATCCAATTGGAGATGGGATATAACCAAACACATTAAACTGAAATCTGCGAGAGATCCTGAGCACAATGACGCAAAAGTACTTATGACTGATGAAACAGGAAGAAGGAACTATAGCAAATACAACAAATTCTTAGCAATGCCTATTTTAAATGAAAATGGTGAAAATGAGTTCCATTACCTGGATCCTAATACTGCAGTCGATAGCACTATGGAAATGGATGAATCATTTAATGATATATCAGACGTTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAACACGGTGAAGATAGTTACAACTTTATTGATAACAGAAGCTTCAATGAAATTAAGAAACCGAAGAAGACATTATGGAAATGTAAAAAATGTAATTACAAAGATCCTTCAAAAGAAGCTCTTTTAGAGCACGTTCGTGAACATTCCAGATCTGAGGGCATCCATCATGAGGAACCAAACAAGCTACCTGTTAAGAAACCTGAAAATAATACTCCCGATCCAGCAGATCTGGCCTATCGCTGTGGACATTGTAATCAACTGTCTAATTGGAAACATGTCATCCAGCGCCATTGCCGATTAAAACACGATGGAGTAATCAAAGTGATAACTACAGTGAAACCGAAACCTGACCCACCAATGAACATCAATGATATCAACATTGATACCTGCAACAAATGCCCGTACAGAACGAGTGACAAGAAACTACTCATCGCACATTTGCAACAGCATCAGCCATCATCGAACTCTATTTTTAAATGCTACTTCTGTCCCTTCTTCGTAAAGGATGAACCAGAATTAATTCAACATCTACTCTTACATGGTATCACTGACCCTGAAGATTACATCGCAAAAGCAATGGGAACCAAATCCCCAGCACAAGAGCCACCAGCACCTGCCCCTATGACATTGAACTCCACCAAACGTCACAAATGCATAGAATGTCCATACGAAACCAACAGCAAATCACAATTCATGTACCACGAACAATTCCATCGCCTCCCAGCAGATACTCCTTATAAATGTCCAGAATGCAACTACAGCGTATCTAAGCGGCATCTACTGCATCAGCATCTGCGAGTACACGGAATAGCGACCAAACGAATGGAAACTGAAGCCGAATTAGAAGCATCAACATCAAAGTTCGATCCGAAGATGGAATTCCAAATAAATCTCGATGAAATTCCATTTGTCTGGGTTTCGGCCAAGAATGAGTTCCATAAAATGTACAAGTGCCGGTACTGTTCATACGTTAATTCTATAAAATGTAAAATACCAAATCACGAAAAAATTCATTGTATCGTTTTCGAAAACAGTGATACAACTGTGTACAAGTGTTTGGAATGCAAATTCACATGTGATTTTGCCGGTAGGCTTGCCGAGCATTCAAAGTCACATGGGGAAATATATGGTCGCATTTATTGCCCTGTTGAGCATGACGTATCTGATGAAGAACAAATCACTAAATTGAGAAAGGTAATAGAAATTGAAAAATCAGCAAATCCGGAAAGTTTCTCTAGAGAGGATGGCCTTATGCACGAATTGAGAGAAATAAAAGTACTATATTTTTGTCAAAAGTGCCCAGCAAGATTCTTTGAAGAGACCGAACTTAACGTTCATGAAAAATGTCATGATGTCTCATTGCCCAATAAATGTAAAAGTTGTGACTTCTCAGTCACTGAAGTTGATGAATTACCGGCGCATGCCACCGTGCACACAGATGAATATCATACAAAAACAAAGATGCTTAAATTTGTCCACCACTCTCATCCCTCGCACAAACAGCCTGTGCTAGAACTAGTTCACTGTCCAACTACTTTTGAGATTTCGTGGATAGCTACTGGGCCACATAAATCTGAGCATATTGAAAGTCCTATGAAAAAGACGAGTGACACAAAACACGCCAAACAATATTGTTGCAAACAATGTCCAGCTAAGTTTTTCAAAAATTCCGCGCTTACATATCACGTGGGGCTGCATGGAGGAGAAGGCGAGCATAAGTGCAAGAAATGTACTTATGCCGTCAAGAACATTGGAAATCTGGCCAAACATGAATTACTTCACGAAAATGAGAACAAGCCTACGAGTTGTGACTATGAATCTGGTGATGATATGGATTATAAAAATATCCCATTGTCAGGTACAGATTTGTTCCAGAGAAAGACTGAAGCTCAAAAAAGAGTTCTAACTGATAAAGATAAGTTAGTTAAGCCGAACGATCATTTTCCGCCTGTCCTACAAGCTGATCCACAATTCGGTTATTTAATGCATGGTAATCCTGAATTTATATATCCCACGTACCTGAAAAATGGACGTCAAAAAGAAAAACGATACAAATGCCATAAGTGCCCCTCAGCTTTTGAGAAAAGAGAACAATATAAAATTCATTTATCATTGCACGGTTCCAAGCAAAGATATAAATGTGAATTATGTGATTATTCAGTAAAATATTACGCTAATTACGTTCAACATATGCGAAAACATCAAATGAACGATGAAGCACAAGCTGAAAGAAAGAAAGATAACACTGATTTTATAGAATCTGAAAATCAAGAAGACATTAAGCTTGACGACAGTGATAACATTAAACTTGCAATCAAAACTATGCCGAAAGGAGCCGCTAAGAGCGACTTCCAACAATTCTCTATTAGCGACCAGCAAACACTCAGACTGCTGCAGAGGAGACGGTCAATAAATAGTTCTGGCAAGGACCCTAACACTGCTGACACTTCGCCGATGAAAGAACGCAAAATGCACATGTGCCTATTGTGTCCCTACACTAATCAACGTCAAGATTCGTTAAATAATCATTACAGAAGGCACGGTGACACCGATATTATGAACGGAGGAAGCCATAAATGTTCTCATTGCGACCTAGTGGTCGTTCAGTCACATTTCCTTCGGGAACATCTGAAGACACACTTCATCTACCACAAAACTCTAATTCCCGAATGTTTTGTAGCTAATGAAGCGGTTAGTTTTACCATCACCAAGATGGATGACGACAGTGAATCCGTTGATCTCAAATTAGAAATGCAGAACAAGAGTTTTGCGTGTAATGATGAAAAGATATTTGTGAAAATTAAAACTGGAGAGCTATTGGTGGAATAA
Protein Sequence: MLQQMSSPPSAQAGEVATIVRHLEGRVCGDVSSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHGAKPTSTAVKVDAELSPPSYDNMEPAERIEDMVEEVEDCEDMMMEVDEDSMDQPDDIDVDCDRSAEYAADSMPYYKRANMEKSKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFNCSMCNFTADIKQSLTVHEMNHHTPPAGQSLSSRRRNRVGASDTVTAEFDAASALLPKEEEGSGDSRSSHSVSDMGLQYADRELVSCKSDSNDGTASDAISRKETSQDGYNQLSPTNSSDEKQQKQNRKVPRPIPQLIPLNSSTPNQKQTCSGEPPQKKFKESPRADIDDESAENTLLPANPLIKETAGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKTCSPQTNRINANTSLKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSENMEDENAIKNEHSNDGVYPVHEKEAEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTLPEIHRGFDPEIIDDNESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPILNENGENEFHYLDPNTAVDSTMEMDESFNDISDVMNVQFEMQPLNLQTQHGEDSYNFIDNRSFNEIKKPKKTLWKCKKCNYKDPSKEALLEHVREHSRSEGIHHEEPNKLPVKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINDINIDTCNKCPYRTSDKKLLIAHLQQHQPSSNSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKAMGTKSPAQEPPAPAPMTLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRMETEAELEASTSKFDPKMEFQINLDEIPFVWVSAKNEFHKMYKCRYCSYVNSIKCKIPNHEKIHCIVFENSDTTVYKCLECKFTCDFAGRLAEHSKSHGEIYGRIYCPVEHDVSDEEQITKLRKVIEIEKSANPESFSREDGLMHELREIKVLYFCQKCPARFFEETELNVHEKCHDVSLPNKCKSCDFSVTEVDELPAHATVHTDEYHTKTKMLKFVHHSHPSHKQPVLELVHCPTTFEISWIATGPHKSEHIESPMKKTSDTKHAKQYCCKQCPAKFFKNSALTYHVGLHGGEGEHKCKKCTYAVKNIGNLAKHELLHENENKPTSCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNTDFIESENQEDIKLDDSDNIKLAIKTMPKGAAKSDFQQFSISDQQTLRLLQRRRSINSSGKDPNTADTSPMKERKMHMCLLCPYTNQRQDSLNNHYRRHGDTDIMNGGSHKCSHCDLVVVQSHFLREHLKTHFIYHKTLIPECFVANEAVSFTITKMDDDSESVDLKLEMQNKSFACNDEKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: iTF_00726922;
80% Identity: -