Basic Information

Insect: Agrochola lychnidis
Gene Symbol: -
Assembly: GCA_963680765.1
Location: OY796858.1:17551082-17559472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.7 4.7e+02 3.0 0.9 1 23 54 77 54 77 0.94

2 19 0.1 13 7.9 4.1 1 23 84 107 84 107 0.97

3 19 6 7.4e+02 2.3 4.0 1 23 193 215 193 215 0.96

4 19 0.002 0.25 13.2 1.0 2 23 221 242 220 242 0.97

5 19 2.5 3.1e+02 3.5 1.4 1 23 248 270 248 271 0.94

6 19 0.24 31 6.7 3.4 2 22 503 523 502 523 0.95

7 19 0.1 13 7.9 2.6 1 23 620 642 620 642 0.95

8 19 3.7 4.6e+02 3.0 0.3 2 23 779 800 778 800 0.95

9 19 0.0013 0.17 13.8 0.5 2 23 880 901 879 901 0.96

10 19 0.16 19 7.3 0.3 1 23 909 931 909 931 0.97

11 19 5.9 7.4e+02 2.3 2.6 1 23 967 989 967 989 0.93

12 19 0.00029 0.036 15.9 4.0 1 23 997 1019 997 1019 0.99

13 19 0.12 16 7.6 1.9 1 23 1098 1120 1098 1120 0.99

14 19 0.0026 0.33 12.9 1.0 1 23 1290 1312 1290 1312 0.96

15 19 0.011 1.4 10.9 0.5 1 23 1318 1340 1318 1340 0.96

16 19 0.008 0.99 11.4 2.6 1 23 1430 1452 1430 1452 0.97

17 19 0.0002 0.025 16.4 1.4 1 23 1458 1480 1458 1480 0.99

18 19 0.99 1.2e+02 4.8 2.7 1 23 1572 1594 1572 1594 0.96

19 19 0.015 1.9 10.5 5.5 1 23 1605 1627 1605 1627 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.7	4.7e+02	3.0	0.9	1	23	54	77	54	77	0.94
2	19	0.1	13	7.9	4.1	1	23	84	107	84	107	0.97
3	19	6	7.4e+02	2.3	4.0	1	23	193	215	193	215	0.96
4	19	0.002	0.25	13.2	1.0	2	23	221	242	220	242	0.97
5	19	2.5	3.1e+02	3.5	1.4	1	23	248	270	248	271	0.94
6	19	0.24	31	6.7	3.4	2	22	503	523	502	523	0.95
7	19	0.1	13	7.9	2.6	1	23	620	642	620	642	0.95
8	19	3.7	4.6e+02	3.0	0.3	2	23	779	800	778	800	0.95
9	19	0.0013	0.17	13.8	0.5	2	23	880	901	879	901	0.96
10	19	0.16	19	7.3	0.3	1	23	909	931	909	931	0.97
11	19	5.9	7.4e+02	2.3	2.6	1	23	967	989	967	989	0.93
12	19	0.00029	0.036	15.9	4.0	1	23	997	1019	997	1019	0.99
13	19	0.12	16	7.6	1.9	1	23	1098	1120	1098	1120	0.99
14	19	0.0026	0.33	12.9	1.0	1	23	1290	1312	1290	1312	0.96
15	19	0.011	1.4	10.9	0.5	1	23	1318	1340	1318	1340	0.96
16	19	0.008	0.99	11.4	2.6	1	23	1430	1452	1430	1452	0.97
17	19	0.0002	0.025	16.4	1.4	1	23	1458	1480	1458	1480	0.99
18	19	0.99	1.2e+02	4.8	2.7	1	23	1572	1594	1572	1594	0.96
19	19	0.015	1.9	10.5	5.5	1	23	1605	1627	1605	1627	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGAGCGCACAAGTCGGCGAGGTCGCGACTATCGTGCGCCACCTTGAAGGCCGCGTCTGCGGCGACGTGTCTTCGGAGGCTTCCTCGGACGCTGCCGAAGATTTTGAATTACCACAGTGCAAGATAAGGAGGAATTATAATTGCACCAAGTGCACGTTCTATACGCAGAACCCGCGCGCTTATCTCGTCCACACGCGTGACGCTCACTTCGTTAGACTCAAGATTTACGATTGTCCACACTGTGTTTACGCCTCGAGACATCATCAAAAACTTATAAGACACGTCAAAATGGTTCACGCAGGATCAAAGCCGACTTCTGCGGTTGCTAAAGTGGATGCAGAGCTATCACCTCCCTCCAACGATAACATGGAGCCAGCAGAGCGCATTGAAGACATGCTTGAGGAAGTCGAGGACTGCGAGGATATGATGATGGAAGTAGATGATGACTCCATGGACCAACCTGATGATATCGATGGCGACTGCGATAGAAGTGTTGACTACGCATCGCCCTCTTATCGGAGGGCACATCTGTCAAAAGCTAAGGGCAAATTCTTCTCATGCGATAAGTGCAACTATGTCACGCATATAAGAGCTAGATTCACAAAGCACGTTAAGTATCATTCGATGCCTATGATCAAGTGTACAATGTGCGATTTTCGAACTCCATACAAGTGGAATTTGGACCGTCACATGAAGAACCACGGTGGAAGTGGGAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCACACACCGCCAGCGGGCCAATCGCTGTCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTATCGCGGAGTTCGACGCAGCGAGCACGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCAGTCCTCACACTCGGTCTCGgACATGGGTCTACAATACGCAGAGAGAGAACTAGTCAGTTGCAAAAGTGATTCCAATGACGGTACAGCGTCTGACGCAATCACCAGAAAAGAGTCTTCGCAAGATGGATACAACCAGCTTTCACCAACCCACAGCGCAGACGAGaagcaacaaaaacaaagcagaAAGATTCCCCGACCAATACCACAACTCATACCGTTAAACTCTTCAACACCCAACCAAAAACAAACATGCTCTGGGGAACCGCCGCAGAAAAAGTTCAAGGAATCTTTACCCATCGACATTGATGATGTATCTGCAGAAAATACTCTTCTACCAGCAAATCCATCAATAAAAGAGACAGGTCGAAAGAAAAATGAAtcatttttcgacagattaaaAGAAAGATTGCTTACAGAAACAGGAGAAGAAGGCTCACTAATATGCAAGATCTGTGGATTTGAAAGTAAATGCTTATCAGAACATTCTGTCCACGAGAAAAATTGCTCTCCACAAACGAACCGCATCAATGCAAACACGTCGCTGAAAAGTTTAAGTTCGACTCGATGTCAGAATTGCAGACACAGATGTAAATCTAGCGCTGACCTGTACATCCACATGCAAACTTGCGGCAAGAGCGAAAAAATCGACGATGAAAACACTATCAAAAATGAAAACAGTAGTGATGAAGTCATTCCAATCCATGAAAAAGAGACTGAACCGCACCCAATGGAGAACGTCGTTTTCGTATGGAACAACATTAATCATGACCCTAACAAGTTTGATATACCACTAGACATTAACATAAATGATGATTCCACTCTACCAGAAATACATCAAAGTTTTGACGCTGAGATTGTTGATGAAAATGAAAGCATGAATTTGTCACCAAGTCAAGCTATTGGAAGGAAGGTATTTAAATGTCCACATTGTCCATTTTTCTCCACAACAGCGTCCAGATTTCACGTTCATATCGTGGGACACTTAAACAAGAAACCATTTGAGTGTTCCCTCTGCAAATATAAATCTAATTGGAGATGGGATATAACTAAACACATTAAATTGAAATCTGCGAGGGATCCTGAACATAACGAAGCAAAAGTACTTATGACTGATGAAACAGGAAGAAGAAACTATAGCAAATACAACAAATTCTTAGCGATGCctgttttaaatgaaaatggCGAAAATGAATTTCATTATCTGGATCCTAATACTGCAGTCGATAGCACGATGGAAATGGATGAATCATTTAATGATATAACAGACGTTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAACACAGTGAAGATAGTTACAACTATATTGATAACAGAGGTCTCAATGATATGAAGAAACCCAAAAAAACATTATGGAAATGTAAAAGATGTAATTACAAagaTCCCTCAAGAGAAGCACTTTTAGAGCATGTTCGTGAACACTCCAGATCGGATGGCATTCATGACGAACTAAACAAACCGCCTATTAAGAAACCTGAAAATAATACTCCCGACCCAGCAGACCTGGCGTATCGTTGTGGCCACTGTAATCAGTTGTCTAATTGGAAACATGTCATACAGCGCCATTGCCGATTAAAACACGATGGAATAATCAAAGTGATAACTACAGTTAAACCAAAACCTGACCCACCAATGAACATCAATGAGATCAACATTGACACTTGCAACAAATGCCCCTACAGAACGAGTGACAAGAAACTACTCATTGCTCATTTACAACAGCATCAGCCCTCGCCGAACTCTATTTTCAAGTGCTACTTCTGCCCATTCTTCGTAAAGGATGAGCCAGAATTAATCCAACATCTACTCCTGCACGGTATCACTGACCCAGAAGATTACATCGCAAAGGCAATGGGAACCAAATCCCCAGGACCAGAACCGCAAGCACCTGTTACTACGACATTAAACTCTACCAAACGTCACAAATGCATAGAATGTCCATACGAGACAAACAGTAAGTCACAATTTATGTACCACGAACAATTTCATCGACTTCCGGCTGATACGCCTTATAAATGTCCAGAATGTAACTACAGCGTATCTAAGAGACACCTGCTGCACCAGCATCTGCGAGTACACGGAATCAAAAGAGTTGAAACTGAAGCCGAATTAGAAGCAGCACAAAACAAGGTAACTAAACTGGACTTCCATATTAATCTTGATGAAATACCGTATGTCTGGGTTTCTGCTAAGAATGAGTTCCATAAAATGTACAAGTGCCGATATTGTTCATACGTTAATGCTGTAAAAAGCAAAATACCAAATCATGAAAAAATTCATTGCATCGTATTCGAAAACAATGATACAACTATCTACAAGTGTTTGGAATGTAAATTCACATGTGATAACGCCGGCAGGCTAGCCGAGCATTCCAAAACTCACGGGGAAATATACGGTCGCATTTATTGTCCCGTTGAATATGATATACCCGATGATGAACAAATCACTAAATTGAGAAAGGTTATAGAAATTGAAAAGTCAGCAAATCCAGAAAGTTTCTCTAGAGATGAAGGCACGCACGAACtaagagaaataaaattattatatttttgtcaaAAGTGCCCAGCAAGATTTCTTGAAGACGGTGAACTAGATGCTCATgaaaaatgtcatgatttaacATTGCCCAATAAATGTAAGAGTTGTGACTTTTCAGTCATGGAAGAAAATGAACTAGCGGCACATGATACCGTGCACACAGATGAATATCACACAAAAACGAAGATGCTTAAATTTGTTCACCACTCACATCCTTTGCACAAACAACCAGTGCTAGACTTTGTACTCTGTTCAAATACTTCAGAGATTACGTGGCGATCCACTGGGCCAAGTAAAGCTGAACATATCGAAAGTCCTATGAAAAAAGATACAAAACACATGCCAAAACAATATTATTGCAAACAATGTCCAGCAAAGTTCTTCAAAAGTTCCGCGCTTACCTATCACATGGGGCTACATGGAGGTGAGGGCGAGTTTAAGTGCAAGAAGTGTAATTACGCAGTGAAGAACGTTGGAAATCTAGGTAAACATGAATTACTTCACGAAAATGAGCACAAGGCTACAACTTGTGACTATGAATCCGGTGAAGATATGgattataaaaatattccatTGTCGGGAACAGATTTGTTCCAGAGAAAGACTGAGGCTCAGAAAAGAGTATTAACTGATAAAGATAAGTTAGTTAAGCCGAACGATCATTTTCCGCCTGTCCTACAAGCCGATCCCCAATTCGGTTATTTAATGCATGGTAATCCTGAATTTATATATCCCACGTACCTGAAAAATGGACGTCAAAAAGAAAAGCGATACAAATGCCACAAGTGCCCTTCAGCTTTTGAGAAAAGAGAACAATATAAAATTCATTTGTCATTGCACGGCTCCAAGCAGAGATATAAATGTGAACTATGTGattattcagtaaaatattacgCTAATTACGTTCAACATATGCGCAAACATCAAATGAACGATGAAGCTCAagctgaaagaaagaaagataataatgattttacaGAATCTGAACATCGAGAAGACGTTAAACAAGACGACAGCAGTGATAACATTAAACTTGCAATAAAAACTATGCCAAAAGGAGCTGCTAAGAGCGACTTTCAACAATTCTCAATTAGCGACCAGCAAACGCTCAGACTGCTGCAGAGGAGACGGTCAATGAATAATTCTGGAAAGGATCACACAACTTCTGAAACTTCGCCGATTAAAGAGCGCAAAATGCACATGTGTCTGTTATGTCCTTACACTAACCAACGTCAAGATTCTTTAAGTAATCATTACAGAAGGCACGGTGACACCGATGTTCTGAACGGAGGGAGTCATAGATGTTCCCATTGCGATCTAGTGGTTGTTCAGTCGCATTTCCTTAGGGAACATCTGAAGACACACTTCAACTACCACAAAACTCTCATTCCCGAATGTTTTGTGGCTAACGAAGCTGTTAGTTTTACCATAACCAAATTGGATGAAGATAGTGAATCAGTTGATCTCAAATTAGACATGCAGAACAAGAGTTTTGCATGTAATGATGAAAAGATATTTGTGAAAATTAAAACTGGAGAGTTATTGGTAGAATAA
Protein Sequence: MLQQMSSPPSAQVGEVATIVRHLEGRVCGDVSSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHAGSKPTSAVAKVDAELSPPSNDNMEPAERIEDMLEEVEDCEDMMMEVDDDSMDQPDDIDGDCDRSVDYASPSYRRAHLSKAKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPPAGQSLSSRRRNRVGASDTVIAEFDAASTLLPKEEEGSGDSQSSHSVSDMGLQYAERELVSCKSDSNDGTASDAITRKESSQDGYNQLSPTHSADEKQQKQSRKIPRPIPQLIPLNSSTPNQKQTCSGEPPQKKFKESLPIDIDDVSAENTLLPANPSIKETGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTSLKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSEKIDDENTIKNENSSDEVIPIHEKETEPHPMENVVFVWNNINHDPNKFDIPLDININDDSTLPEIHQSFDAEIVDENESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTAVDSTMEMDESFNDITDVMNVQFEMQPLNLQTQHSEDSYNYIDNRGLNDMKKPKKTLWKCKRCNYKDPSREALLEHVREHSRSDGIHDELNKPPIKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSPNSIFKCYFCPFFVKDEPELIQHLLLHGITDPEDYIAKAMGTKSPGPEPQAPVTTTLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIKRVETEAELEAAQNKVTKLDFHINLDEIPYVWVSAKNEFHKMYKCRYCSYVNAVKSKIPNHEKIHCIVFENNDTTIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEYDIPDDEQITKLRKVIEIEKSANPESFSRDEGTHELREIKLLYFCQKCPARFLEDGELDAHEKCHDLTLPNKCKSCDFSVMEENELAAHDTVHTDEYHTKTKMLKFVHHSHPLHKQPVLDFVLCSNTSEITWRSTGPSKAEHIESPMKKDTKHMPKQYYCKQCPAKFFKSSALTYHMGLHGGEGEFKCKKCNYAVKNVGNLGKHELLHENEHKATTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNNDFTESEHREDVKQDDSSDNIKLAIKTMPKGAAKSDFQQFSISDQQTLRLLQRRRSMNNSGKDHTTSETSPIKERKMHMCLLCPYTNQRQDSLSNHYRRHGDTDVLNGGSHRCSHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTITKLDEDSESVDLKLDMQNKSFACNDEKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: iTF_00726922;
80% Identity: -