Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000037.1:2846195-2854064[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.7 3e+02 3.0 0.9 1 23 54 77 54 77 0.94

2 20 0.1 8.3 7.9 4.1 1 23 84 107 84 107 0.97

3 20 5.8 4.9e+02 2.3 4.0 1 23 195 217 195 217 0.96

4 20 0.002 0.17 13.2 1.0 2 23 223 244 222 244 0.97

5 20 2.4 2e+02 3.5 1.4 1 23 250 272 250 273 0.94

6 20 0.24 20 6.7 3.4 2 22 506 526 505 526 0.95

7 20 0.1 8.3 7.9 2.6 1 23 622 644 622 644 0.95

8 20 3.7 3.1e+02 2.9 0.3 2 23 781 802 780 802 0.95

9 20 0.0013 0.11 13.8 0.5 2 23 882 903 881 903 0.96

10 20 0.19 16 7.0 0.3 1 23 911 933 911 933 0.97

11 20 5.8 4.8e+02 2.3 2.6 1 23 970 992 970 992 0.93

12 20 0.00028 0.023 15.9 4.0 1 23 1000 1022 1000 1022 0.99

13 20 0.12 10 7.6 1.9 1 23 1101 1123 1101 1123 0.99

14 20 0.97 81 4.8 0.1 2 19 1208 1225 1207 1229 0.92

15 20 0.0026 0.21 12.9 1.0 1 23 1294 1316 1294 1316 0.96

16 20 0.0054 0.45 11.9 0.3 1 23 1322 1344 1322 1344 0.97

17 20 0.0078 0.65 11.4 2.6 1 23 1434 1456 1434 1456 0.97

18 20 0.0002 0.016 16.4 1.4 1 23 1462 1484 1462 1484 0.99

19 20 0.97 81 4.8 2.7 1 23 1577 1599 1577 1599 0.96

20 20 0.011 0.95 10.8 5.6 1 23 1610 1632 1610 1632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.7	3e+02	3.0	0.9	1	23	54	77	54	77	0.94
2	20	0.1	8.3	7.9	4.1	1	23	84	107	84	107	0.97
3	20	5.8	4.9e+02	2.3	4.0	1	23	195	217	195	217	0.96
4	20	0.002	0.17	13.2	1.0	2	23	223	244	222	244	0.97
5	20	2.4	2e+02	3.5	1.4	1	23	250	272	250	273	0.94
6	20	0.24	20	6.7	3.4	2	22	506	526	505	526	0.95
7	20	0.1	8.3	7.9	2.6	1	23	622	644	622	644	0.95
8	20	3.7	3.1e+02	2.9	0.3	2	23	781	802	780	802	0.95
9	20	0.0013	0.11	13.8	0.5	2	23	882	903	881	903	0.96
10	20	0.19	16	7.0	0.3	1	23	911	933	911	933	0.97
11	20	5.8	4.8e+02	2.3	2.6	1	23	970	992	970	992	0.93
12	20	0.00028	0.023	15.9	4.0	1	23	1000	1022	1000	1022	0.99
13	20	0.12	10	7.6	1.9	1	23	1101	1123	1101	1123	0.99
14	20	0.97	81	4.8	0.1	2	19	1208	1225	1207	1229	0.92
15	20	0.0026	0.21	12.9	1.0	1	23	1294	1316	1294	1316	0.96
16	20	0.0054	0.45	11.9	0.3	1	23	1322	1344	1322	1344	0.97
17	20	0.0078	0.65	11.4	2.6	1	23	1434	1456	1434	1456	0.97
18	20	0.0002	0.016	16.4	1.4	1	23	1462	1484	1462	1484	0.99
19	20	0.97	81	4.8	2.7	1	23	1577	1599	1577	1599	0.96
20	20	0.011	0.95	10.8	5.6	1	23	1610	1632	1610	1632	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGAGCGCACAAGTCGGCGAGGTCGCGACTATCGTGCGCCACCTTGAAGGCCGCGTCTGCGGCGACGTGTCTTCGGAGGCTTCCTCAGACGCCGCCGAAGATTTTGAATTACCACAGTGCAAGATAAGGAGGAATTATAATTGCACCAAGTGCACGTTCTATACGCAGAACCCACGCGCTTATCTCGTCCACACGCGTGACGCTCACTTCGTTAGACTCAAGATTTACGATTGTCCTCACTGTGTTTACGCTTCGAGACATCATCAAAAACTTATAAGACACGTCAAAATGGTTCACGGAGGATCAAAGTCGACTCCAGTGGCTAGTAAAGTGGAAGCAGAGCGATCACCTCCCTCCAACGATAACATGGAGCCAGTTGCAGTAGAGCGCATTGAAGACATGTTCGAGGAAGTCGAAGACTGCGAGGATATGATGATGGAAGTAGATGATGACTCCATGGACCAACCTGATGATATCGACGGCGACTGCGATAGGAGTGTTGACTACGCATCGCCTTCTTATCGGAGGGCACATCTGTCAAAAGCTAAGGGCAAATTCTTCTCATGCGATAAGTGCAACTATGTCACCCACATAAGAGCTAGATTCACAAAGCACGTCAAGTATCATTCGATGCCTATGATCAAGTGTACAATGTGTGATTTTCGAACTCCATACAAGTGGAATTTGGACCGTCACATGAAGAACCACGGTGGAAGTGGGAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAAATGAATCATCACACACCGCCAGCGGGCCAATCGCTGTCGAGTCGCCGCCGCAACCGGGTGGGCGCCAGCGACACGGTTATCGCGGAGTTCGACGCAGCGAGCACGTTGCTCCCCAAGGAGGAAGAAGGGAGCGGCGACTCGCGGTCCTCACACTCGGTCTCGgACATGGGTCTCCAGTACGCAGAGAGAGAACTAGCCAGTTGCAAAAGTGATTCCAATGATGGTTCAGCGTCTGACGCGCTTACCAGAAAAGAGACTTCGCAAGATGGATACAACCAGCTTTCACCAACCCACAGCGCAGACgagaaacaacaaaaacaaagcaGAAAGATTCCTCGACCAATACCACAACTCATACCGTTAAACTCATCAACACccaaccaaaaacaaacatGCTCCGGGGAACCGCCACAGAAAAAGTTCAAGGAATCTTTACCCATCGACATTGATGATGTGTCAGCTGAAAATACTCTTCTACCAGCAAATCCATTAATAAAAGAGACTGCAAGTCGAAAGAAAAATGAATCGTTCTTCGACAGATTAAAAGAAAGACTGTTAACAGAAACAGGCGAAGAAGGCTCACTAATATGCAAGATCTGTGGATTTGAAAGTAAATGCTTATCAGAACACTCTGTCCACGAGAAAAATTGTTCGCCACAAACTAACCGGATCAATGCAAACACTGCGCTCAAAAGTTTAAGTTCCACTCGATGCCAGAATTGCAGACACAGATGTAAATCTAGCGCCGACTTATACATCCACATGCAAACTTGCGGAAAGAGCGAACAAATCAacgatgaaaatattaaaaatgaaaatagtaATGATGAAGTCATTCCAATCCATGAAAAAGAGACTGAACCGCATCCAATGGAAAACGTCGTTTTCGTATGGAACAACATTAACCATGACCCTAACAAGTTTGATGTTCCTCTAGACATAAACATTAATGATGATTCCACTCTACCAGAAATACATCGAAGTTTTGACGCTGAGATTGTTGATGAAAATGAAAGCATGAATTTGTCGCCGAGTCAAGCTATAGGAAGGAAGGTATTTAAATGTCCACATTGTCCGTTTTTCTCCACAACAGCGTCCAGGTTTCACGTTCATATCGTGGGCCACTTGAACAAGAAACCATTTGAGTGTTCCCTCTGCAAATATAAATCTAATTGGAGATGGGATATAACCAAACACATAAAATTGAAATCTGCGAGGGATCCTGAGCATAACGAAGCAAAAGTACTCATGACTGATGAAACAGGAAGAAGAAACTATAGCAAATACAACAAATTCTTAGCAATGCctgttttaaatgaaaatggCGAAAATGAGTTTCATTACCTGGACCCTAACACTGCAGTCGATAGTTCGATGGAAATGGATGAATCATTTAATGATATATCAGACGTTATGAATGTTCAATTTGAAATGCAACCGCTTAACTTACAGACTCAACACAGTGAAGATAATTACAACTTTATTGATAATAGAGGTCTCAATGATATGAAGAAACCCAAGAAAACATTATGGAAATGTAAAAGATGTAATTACAAagatCCCTCAAGAGAAGCTCTTTTAGATCATGTTCGTGAACACTCCAGATCGGATGGCGGCCATGACGAACTAAACAAACCGCCTATTAAGAAACCTGAAAATAATACTCCCGACCCAGCAGACCTGGCATATCGTTGTGGCCATTGTAACCAATTGTCTAATTGGAAACATGTCATACAGCGCCATTGCCGATTAAAACACGACGGAGTGATCAAAGTGATAACTACAGTTAAACCAAAACCGGACCCACCAATGAACATCAATGAGATCAACATTGACACTTGCAACAAATGCCCGTACAGGACGAGTGACAAGAAACTGCTCATTGCTCATTTACAACAGCATCAGCCGTCCCCGAACTCTATTTTCAAGTGCTACTTCTGCCCATTCTTCGTAAAAGATGAGCCAGAATTAATCTCACATCTACTCCTGCACGGTATCACTGACCCAGAAGATTACATCGCAAAAGCAATGGGAACCAAATCCCCAGGACCACCAGAACCGCAAGCACCTGTCACTACGACATTAAACTCCACCAAGCGACACAAATGCATAGAATGTCCATACGAAACAAATAGTAAGTCACAATTCATGTACCACGAACAATTTCACAGACTTCCAGCTGATACGCCTTATAAATGTCCCGAATGCAACTACAGCGTATCTAAGAGACACCTGCTGCACCAGCATCTACGAGTACACGGAATCAAAAGAATTGAAACTGAGGCGGAATTAGAAGCTGCACAAAGCAAGGTAGCGAAAATGGACTTTCATATTAATCTTGATGAAATACCCTATGTCTGGGTTTCGGCCAAGAATGAGTTTCATAAAATGTACAAGTGCCGATATTGTTCATACGTTAATGctgtaaaaagtaaaataccaAATCATGAAAAAATTCATTGCATCGTATTCGAAGACAATGATACAACTATTTACAAGTGTTTGGAATGCAAATTCACATGTGATAACGCCGGCAGGCTAGCCGAGCATTCCAAAACTCACGGGGAAATATATGGTCGCATTTATTGTCCCGTTGAATATGATGTGCCCGATGATGAACAAATCACTAAATTGAGAAAGGTTATAGAAATTGAAAAGTCAGCAAATCCGGAAAGTTTCACTAGAGATGAAGGCACTACGCACGAATtaagagaaataaaattattatatttttgtcaaaagtgCCCGGCAAGATTCCTTGAAGACGGCGAACTAGACGTTCATGAAAAATGTCATAATGTAACATTGCCAAATAAATGCAAAATTTGTGACTTTTCAGTCACCGAAGAAAATGAATTAGCGGCACATGATACCGTGCACACAGATGAATATCACACAAAAACGAAGATGCTTAAATTTGTTCACCACTCACATCCTTTGCACAAACAACCCATGCTAGATTTTGCTCTCTGTCAAAATACTTCGGAGATTACGTGGCGAGCCACTGGGCCAAGTAAACCTGAACATGTCGAAACTCCTATGAAAAAAGATACAAAACACGTgccaaaacaatattattgcaAACAATGTCCAGCTAAGTTCTTCAAAAGTTCCGCGCTTACCTATCACATGGGGCTCCACGGAGGTGATGGCGAGTTTAAGTGCAAGAAGTGTAATTACGCCGTGAAGAACGTTGGAAATCTAGGCAAACATGAATTAGTTCACGAAAATGAGAACAAGGCTACAACTTGTGACTATGAATCTGGCGAAGATATGGATTATAAAAATATCCCTTTGTCGGGCACAGATTTATTCCAGAGAAAGACTGAGGCTCAGAAAAGAGTATTAACTGATAAAGATAAGTTAGTTAAGCCGAACGATCATTTTCCGCCTGTCCTACAAGCCGATCCCCAATTCGGTTATTTAATGCATGGCAATCCTGAATTTATATATCCCACATACCTGAAAAATGGTCGTCAAAAAGAAAAGCGATACAAATGCCACAAGTGCCCCTCAGCTTTTGAGAAAAGAGaacaatataaaattcattTGTCCTTGCACGGCTCCAAGCAAAGATATAAATGTGAGTTATGCGATTATTCAGTAAAATATTACGCTAATTACGTTCAACATATGCGaaaacatcaaatgaacgaTGAAGCTCAagctgaaagaaagaaagataataatGATTTTACAGAATCTGAACAACAAGAAGACGTTAAGCAAGATGACAGCAGTGATAACATTAAACttgcaataaaaactataccAAAAGGAGGTGCTAAGAGCGACTTTCAACAATTCTCAATTAGCGACCAGCAAACGCTCAGGCTGCTGCAGAGGAGGCGATCAATGAATATTAATTCTGGAAAGGACCACAGCACTTCTGAAACTTCGCTGATCAAAGAGCGCAAAATGCACATGTGTCTGTTATGTCCCTACACTAACCAACGTCAAGATTCTTTAAGCAATCATTACAGAAGGCACGGAGACACCGATATTCTGAACGGAGGAAGTCATAAATGTTCCCATTGCGACCTAGTGGTTGTTCAGTCGCATTTCCTTCGGGAACATCTGAAGACACACTTCAATTACCACAAAACTCTTATTCCCGAATGTTTTGTGGCTAATGAAGCTGTTAGTTTTACCATAAGCAAGTTGGATGAAGATAGTGAATCAGTTGATCTCAAATTAGACATGCAGAACAAGAGTTTTGCATGTAATGACGAAAAgatatttgtaaaaattaaaactggaGAATTATTGGTGGAATAA
Protein Sequence: MLQQMSSPPSAQVGEVATIVRHLEGRVCGDVSSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHGGSKSTPVASKVEAERSPPSNDNMEPVAVERIEDMFEEVEDCEDMMMEVDDDSMDQPDDIDGDCDRSVDYASPSYRRAHLSKAKGKFFSCDKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPPAGQSLSSRRRNRVGASDTVIAEFDAASTLLPKEEEGSGDSRSSHSVSDMGLQYAERELASCKSDSNDGSASDALTRKETSQDGYNQLSPTHSADEKQQKQSRKIPRPIPQLIPLNSSTPNQKQTCSGEPPQKKFKESLPIDIDDVSAENTLLPANPLIKETASRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTALKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSEQINDENIKNENSNDEVIPIHEKETEPHPMENVVFVWNNINHDPNKFDVPLDININDDSTLPEIHRSFDAEIVDENESMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNENGENEFHYLDPNTAVDSSMEMDESFNDISDVMNVQFEMQPLNLQTQHSEDNYNFIDNRGLNDMKKPKKTLWKCKRCNYKDPSREALLDHVREHSRSDGGHDELNKPPIKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKKLLIAHLQQHQPSPNSIFKCYFCPFFVKDEPELISHLLLHGITDPEDYIAKAMGTKSPGPPEPQAPVTTTLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIKRIETEAELEAAQSKVAKMDFHINLDEIPYVWVSAKNEFHKMYKCRYCSYVNAVKSKIPNHEKIHCIVFEDNDTTIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEYDVPDDEQITKLRKVIEIEKSANPESFTRDEGTTHELREIKLLYFCQKCPARFLEDGELDVHEKCHNVTLPNKCKICDFSVTEENELAAHDTVHTDEYHTKTKMLKFVHHSHPLHKQPMLDFALCQNTSEITWRATGPSKPEHVETPMKKDTKHVPKQYYCKQCPAKFFKSSALTYHMGLHGGDGEFKCKKCNYAVKNVGNLGKHELVHENENKATTCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNNDFTESEQQEDVKQDDSSDNIKLAIKTIPKGGAKSDFQQFSISDQQTLRLLQRRRSMNINSGKDHSTSETSLIKERKMHMCLLCPYTNQRQDSLSNHYRRHGDTDILNGGSHKCSHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTISKLDEDSESVDLKLDMQNKSFACNDEKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: iTF_00726922;
80% Identity: -