Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438890.1:17684765-17693641[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.9 5.5e+02 3.0 0.9 1 23 54 77 54 77 0.94

2 20 0.11 15 7.9 4.1 1 23 84 107 84 107 0.97

3 20 6.3 8.8e+02 2.3 4.0 1 23 199 221 199 221 0.96

4 20 0.0031 0.43 12.7 0.9 2 23 227 248 226 248 0.97

5 20 2.6 3.6e+02 3.5 1.4 1 23 254 276 254 277 0.94

6 20 0.26 36 6.7 3.4 2 22 510 530 509 530 0.95

7 20 0.16 22 7.3 3.6 1 23 627 649 627 649 0.95

8 20 1 1.4e+02 4.8 0.3 2 23 786 807 785 807 0.95

9 20 0.0022 0.31 13.2 0.4 2 23 887 908 886 908 0.96

10 20 0.28 38 6.6 0.6 1 23 916 938 916 938 0.97

11 20 6.2 8.7e+02 2.3 2.6 1 23 974 996 974 996 0.93

12 20 0.0003 0.042 15.9 4.0 1 23 1004 1026 1004 1026 0.99

13 20 0.28 39 6.6 1.8 1 23 1107 1129 1107 1129 0.98

14 20 1.9 2.6e+02 4.0 0.2 2 19 1214 1231 1213 1235 0.93

15 20 0.0024 0.34 13.1 0.8 1 23 1303 1325 1303 1325 0.96

16 20 0.032 4.4 9.5 1.1 1 23 1331 1353 1331 1353 0.95

17 20 0.0084 1.2 11.4 2.6 1 23 1442 1464 1442 1464 0.97

18 20 0.00021 0.029 16.4 1.4 1 23 1470 1492 1470 1492 0.99

19 20 1 1.5e+02 4.8 2.7 1 23 1583 1605 1583 1605 0.96

20 20 0.012 1.6 10.9 5.8 1 23 1616 1638 1616 1638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.9	5.5e+02	3.0	0.9	1	23	54	77	54	77	0.94
2	20	0.11	15	7.9	4.1	1	23	84	107	84	107	0.97
3	20	6.3	8.8e+02	2.3	4.0	1	23	199	221	199	221	0.96
4	20	0.0031	0.43	12.7	0.9	2	23	227	248	226	248	0.97
5	20	2.6	3.6e+02	3.5	1.4	1	23	254	276	254	277	0.94
6	20	0.26	36	6.7	3.4	2	22	510	530	509	530	0.95
7	20	0.16	22	7.3	3.6	1	23	627	649	627	649	0.95
8	20	1	1.4e+02	4.8	0.3	2	23	786	807	785	807	0.95
9	20	0.0022	0.31	13.2	0.4	2	23	887	908	886	908	0.96
10	20	0.28	38	6.6	0.6	1	23	916	938	916	938	0.97
11	20	6.2	8.7e+02	2.3	2.6	1	23	974	996	974	996	0.93
12	20	0.0003	0.042	15.9	4.0	1	23	1004	1026	1004	1026	0.99
13	20	0.28	39	6.6	1.8	1	23	1107	1129	1107	1129	0.98
14	20	1.9	2.6e+02	4.0	0.2	2	19	1214	1231	1213	1235	0.93
15	20	0.0024	0.34	13.1	0.8	1	23	1303	1325	1303	1325	0.96
16	20	0.032	4.4	9.5	1.1	1	23	1331	1353	1331	1353	0.95
17	20	0.0084	1.2	11.4	2.6	1	23	1442	1464	1442	1464	0.97
18	20	0.00021	0.029	16.4	1.4	1	23	1470	1492	1470	1492	0.99
19	20	1	1.5e+02	4.8	2.7	1	23	1583	1605	1583	1605	0.96
20	20	0.012	1.6	10.9	5.8	1	23	1616	1638	1616	1638	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGAGCGCACAAGTCGGCGAGGTCGCGACTGTCGTGCGCCACCTTGAAGGCCGTGTCTGCGGCGACGTGTCTTCGGAGGCCTCCTCGGATGCCGCCGAGGATTTTGAATTACCAGAGTGCAAGATAAAGAGGAACTATAATTGCACCAAGTGCACGTTCTACACGCAGAACCCGCGCGCTTATCTCGTACACACGCGCGACGCTCACTTCGTTAGACTCAAGATTTATGATTGTCCACACTGTGTTTACGCTTCGAGACATCATCAGAAACTTATAAGACACGTCAAAATGGTACATGGAGTGCCAAAGCCGACCGCTGCGGCCGCTAAAGTACCCACTTTACCGGCCGCAGAGCTATCACCTCCCCCCGTCGACAATACGGAGTCAGCAGAGCGCATTGAAGACATGCTAGAGGAAGTGGAAGACTGTGAAGACATGATGATTGAAGTTGATGAGGACGACTCTATGGACCACGCAGCTGATGAATTCGACGGTGACTGCGATAGAAATGGTGACCACGCTTCGCCGGCTTATCGGAGGGCACATCTGTCAAAAGCTAAGGGCAAATTCTTCTCATGCGATAAGTGTAACTATGTCACCCACATAAGAGCTAGATTCACAAAACACGTAAAGTATCATACCATGCCTATGATCAAGTGTACATTGTGTGATTTCCGAACACCGTACAAGTGGAATTTGGACCGTCACATGAAGAACCACGGTGGAAGTGGAAGTTTCAATTGTTCGATGTGCAACTTCACGGCGGACATCAAGCAGAGTCTGACGGTGCACGAGATGAATCATCACACGCCGTCGCCGGGTCAGACGATGTGGAGAGTGCGCCGCAACCGGGTGGGCGCCAGCGATATGGTGTGCGCCGAGCTCGACACGGCCGTGCTCCCCAAGGAGGACGAGGGGAGCGGTGACTCGCGGTCCTCACACTCGGTCTCGGACATGGGTCTCCAATACGCAGAGAACACAGACAGAGAACTAGTCAATTGCAAAAGTGATTCCAATGACGGTACAGCGTCTGACGCAATCACCAGAACTAAGGAGACTTCGCAAGATGGCTTCAATCAGCTTTCACCTACCAACAGCACAGATGAGAAGCTACAAAAACAAAGCAGAAAGATACCACGACCAATACCACAACTCATACCTTTAAACTCTTCAACACCCAACCAAAAACAACCAAGCTCAGGTGAACCACCACAGAAAAAATTCAAAGAATCTCCCGTCGACATTGACGATGTATCTGCTGAAAACACTCTTTTACCAACACATCCTCTAAAAGAAACTGCAGGTCGAAAGAAAAATGAATCATTTTTCGACAGATTAAAAGAAAGACTGCTAACAGAAACAGGTGAAGAAGGTTCACTAATATGCAAGATCTGTGGATTTGAAAGTAAATGCCTCTCAGAACATTCTGTCCACGAGAAAAATTGTTCACCACAAACGAACCGGATCAATGCAAACACGTCGGTTAAAAGTTTAAGTTCCACTCGATGCCAGAACTGCAGACACAGATGTAAATCTAGCGCAGACTTGTACATTCATATGCAAACTTGCGGAAAGAGCGAAAACAACGACGATAAAAACACTATCAAAAATGAAAATAGTAATGATGGAATCATTCCAATCCATGAAAAAGAGGCTGAACCGCATCCAATGGAAAACGTCGTTTTCGTTTGGAACAATATTAATCATGACCCTAACAAGTTCGAAACACCTCTAGACATTAACATAAATGATGATTCCACTTTGCCAGAAATGCAACGAAGTTTTGATCCTGAGATTGTTGATGACAATGAAAGCATGAATATGTCTCCGAGTCAAGTTATTGATAGGAAGGTATTTAAATGTCCACATTGTAACTTTTTCTCCACAACAGCGTCCAGATTTCACGTTCATATCGTTGGTCACTTAAACAAGAAACCGTTTGAGTGTTCCCTTTGCAAATATAAGTCTAATTGGAGATGGGATATAACCAAacacataaaattgaaatcggCGAGAGATCCCGAGCATAACGAAGCAAAAGTACTTATGACTGATGAAACAGGAAGAAGAAACTATACCAAATACAACAAATTCATAGCAATGCCGTATTTAAATGAACATGGCGTAAATGAGTTCACCTACCTGGATTCCAACACTGATGTCAATAGCACGATGGAAATGGATGAATCATTTAATGATGTATCAGACGTTATGAATGTACAATTTGAAATGCAACCGCTTAACTTACAGACTCAACACAGTGAAGATaattacaacattattgacaTTAGAGGTCTGAATGATATGAAGAAGCCCAAAAAAACATTATGGAAATGTAAAAAGTGTAATTACAAagatCCTTCAAAAGAAGCTCTTCTTGAGCACGTTCGTGATCACTCCAGATCGGATGGCATCCATAACGAACCAAACAAACCGCCTATTAAAAAACCTGAAAATAATACTCCTGATCCAGCCGACCTGGCGTATCGTTGTGgccactgtaatcaattatctAATTGGAAGCATGTCATCCAGCGCCATTGCCGACTAAAGCACGATGGAGTAATCAAAGTGATAACTACAGTCAAACCAAAACCTGACCCACCAATGAACATCAATGAAATTAACATCGATACTTGCAACAAGTGCCCCTACCGGACAAGTGACAAACAACTACTCATCGCACATCTACAACAGCATCAACCTTCGCCGAACTCTATATTCAAGTGCTACTTCTGCCAATTCTTCGTAAAGGATGAGCCAGAATTGATCCAACATCTACTGCTACACGGCATCACGGACCCAGAAGATTACATCGCTAGGGCAAGCGGAACTAAATCCCCAGGAGCAGAACCTCCACCGCCTCTTCCTACGCCATTAAACTCCACTAAGCGTCACAAATGCATAGAATGTCCATACGAAACAAATAGTAAGTCACAGTTCATGTACCACGAACAGTTCCATCGACTGCCGGCCGACACGCCTTACAAATGCCCAGAATGCAACTACAGCGTATCTAAGAGACACCTGCTGCACCAGCATTTGCGAGTACACGGAATAGCAACAAAAAGAACTGAAACTGAGGCCGAATTAGAAGCGTCAACATCAGCACAAAACAAATTGGACTACCACATGAATCTTGATGAAATACCATTTGTTTGGGTTTCGGCAAAGAATGAGTTCCACAAAATGTATAAGTGCCGATATTGTTCGTACGTTAATgctataaaatgtaaaataccAAATCACGAAAAAATTCATTGCATCGTATTCGAAAACAACGATACAACAATTTACAAGTGTTTGGAATGCAAATTCACATGTGATAATGCCGGCAGGCTTGCAGAGCATTCCAAATCACACGGCGAAATATACGGTCGCATTTATTGTCCAGTTGAACATGATGTGCCCGATGAAGAACAAGTCACAAAATTGAGAAAAGTTATAGAAATTGAAAAATCCGCAAATCCAGAAAGTTTCTCCAGAGATGAAGGCACTACGCATGAAAATAGAGAATTAaagatattgtatttttgtcAAAAATGCCCAGCAAGATTTTTTGAGGAGAGCGAAGTTGATGCTCATGAAAAATGTCATGATGTAACATTGCCCAATAAATGTAAAAGTTGTGACTTTTCAGTCACCGAAGAAAGTGAATTAGCAGCACATGATACCGTGCACACGGATGAATATCACACAAAAACGAAGATGCTAAAATTTGTTCACCACTCACATCATACGCATAGACAACCCATGCTAGAGCGTATTCACTGTCCCAACACTTCCGAGATTACGTGGATATCCACTGGACCAAGTCCTAAAGTGGAATATATCGAAAGTCCTatgaaaaaatcaaatgattCAAAACACGTGCCAAAACAATATAGCTGCAAACAATGTCCAGCGAAGTTTTTCAAAAGTTCCGCGCTTACATATCACATGGGTTTACACGGGGGCGATGGCGAGCATAAATGCAAGAAGTGTAATTACGCCGTGAAGAACGTTGGAAATCTAGGCAAACACGAACTCCTTCACGAAAATGAAAACAAGACAAATTGCGACTATGAATCCGGTGATGATATGGATTATAAAAATATCCCACTTTCGGGCACAGATTTGTTCCAGAGGAAAACTGAGGCTCAGAAAAGAGTTTTAACTGATAAAGATAAGTTAGTTAAGCCGAATGACCATTTTCCGCCTGTCCTACAAGCCGATCCCCAATTCGGTTATTTAATGCATGGAAATCCAGAATTCATATATCCCACATACCTGAAAAATGGACGTCAAAAAGAAAAGCGTTACAAATGCCACAAGTGCCCCTCAGCCTTTGAGAAAAGAGAGCaatataaaattcatttatCATTACACGGCTCCAAGCAAAGATATAAATGTGAGTTATGTGATTATTCAGTGAAATATTACGCTAATTACGTTCAACATATGCGAAAACATCAAATGAACGATGAAGCTCAagctgaaagaaagaaagataatAACGATTTTACAGAAACTAAACATCAAGAAGACGTTAAGCAAGAGGACAGCAGTGACAACATTAAACTCGCAATAAAAACTATGCCAAAGGGAACTGCAAAGAGTGACTTTCAACAATTCTCTATTAGCGATCAGCAAACGCTCAGACTGCTGCAGAGGAGACGGAATGAAAATTCTGGAAAGGACCCTAACGCTTCAGAAACTTCGCCGGTCAAAGAACGAAAAATGCACATGTGTCTACTGTGTCCGTACACCAACCAACGTCAAGATTCTTTGAGTAATCATTACAGAAGACACGGTGACCCTGACGTGCTGAACGCAGGAACTCATAAATGTACCCATTGCGACCTAGTGGTTGTTCAGTCGCATTTCCTTCGGGAGCATCTGAAGACACACTTCAATTACCACAAAACTCTTATTCCCGAATGTTTTGTGGCTAATGAAGCCGTTAGTTTTACGATAACCAAGATGGATGAAGACAGTGAATCAGTTGATCTCAAATTAGACTTGCAGAACAAGAGTTTTGCATATAATGATGAAAAGATATTTGTGAAAATTAAAACTGGAGAGCTATCTGTAGAATAA
Protein Sequence: MLQQMSSPPSAQVGEVATVVRHLEGRVCGDVSSEASSDAAEDFELPECKIKRNYNCTKCTFYTQNPRAYLVHTRDAHFVRLKIYDCPHCVYASRHHQKLIRHVKMVHGVPKPTAAAAKVPTLPAAELSPPPVDNTESAERIEDMLEEVEDCEDMMIEVDEDDSMDHAADEFDGDCDRNGDHASPAYRRAHLSKAKGKFFSCDKCNYVTHIRARFTKHVKYHTMPMIKCTLCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPSPGQTMWRVRRNRVGASDMVCAELDTAVLPKEDEGSGDSRSSHSVSDMGLQYAENTDRELVNCKSDSNDGTASDAITRTKETSQDGFNQLSPTNSTDEKLQKQSRKIPRPIPQLIPLNSSTPNQKQPSSGEPPQKKFKESPVDIDDVSAENTLLPTHPLKETAGRKKNESFFDRLKERLLTETGEEGSLICKICGFESKCLSEHSVHEKNCSPQTNRINANTSVKSLSSTRCQNCRHRCKSSADLYIHMQTCGKSENNDDKNTIKNENSNDGIIPIHEKEAEPHPMENVVFVWNNINHDPNKFETPLDININDDSTLPEMQRSFDPEIVDDNESMNMSPSQVIDRKVFKCPHCNFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYTKYNKFIAMPYLNEHGVNEFTYLDSNTDVNSTMEMDESFNDVSDVMNVQFEMQPLNLQTQHSEDNYNIIDIRGLNDMKKPKKTLWKCKKCNYKDPSKEALLEHVRDHSRSDGIHNEPNKPPIKKPENNTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPPMNINEINIDTCNKCPYRTSDKQLLIAHLQQHQPSPNSIFKCYFCQFFVKDEPELIQHLLLHGITDPEDYIARASGTKSPGAEPPPPLPTPLNSTKRHKCIECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIATKRTETEAELEASTSAQNKLDYHMNLDEIPFVWVSAKNEFHKMYKCRYCSYVNAIKCKIPNHEKIHCIVFENNDTTIYKCLECKFTCDNAGRLAEHSKSHGEIYGRIYCPVEHDVPDEEQVTKLRKVIEIEKSANPESFSRDEGTTHENRELKILYFCQKCPARFFEESEVDAHEKCHDVTLPNKCKSCDFSVTEESELAAHDTVHTDEYHTKTKMLKFVHHSHHTHRQPMLERIHCPNTSEITWISTGPSPKVEYIESPMKKSNDSKHVPKQYSCKQCPAKFFKSSALTYHMGLHGGDGEHKCKKCNYAVKNVGNLGKHELLHENENKTNCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNNDFTETKHQEDVKQEDSSDNIKLAIKTMPKGTAKSDFQQFSISDQQTLRLLQRRRNENSGKDPNASETSPVKERKMHMCLLCPYTNQRQDSLSNHYRRHGDPDVLNAGTHKCTHCDLVVVQSHFLREHLKTHFNYHKTLIPECFVANEAVSFTITKMDEDSESVDLKLDLQNKSFAYNDEKIFVKIKTGELSVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231174;
90% Identity: iTF_00726922;
80% Identity: -