Lhum001763.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- tfip11_1
- Assembly
- GCA_000217595.1
- Location
- NW:83798-97414[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-102 2.1e-98 328.6 17.6 1 275 391 659 391 659 0.98 2 2 0.0026 14 4.5 0.1 245 273 674 702 665 704 0.87
Sequence Information
- Coding Sequence
- ATGTCTGAAGACGAAGTGGAAAGCTTTGAAATTACTgattatgatttaaataatgaatttaacaTAGCTCGTCCTCGACGCAAACTCTCAAAGAAGCAACAAATGCTAGGAATATGGGCAGATAATAGTGATGAGGATGAATTATCTGCTAGGCCATCTTTCAAGACTTTCAACAAGGGCCCTAAAAATTATACAGCACCAGTCAATTTCGTTGCTGGTGGTATCCAACAGTCAGGGAAACCAAAAGATAAGGAAGATAAAGAAgatgaagaagaggaagaagaaatgCGTGATTCTCAAACAAACCTTCACAGTGATTCAAGTTCAGAAGATGAAAAGCCAAATAGCCCAAAATCACGTTCATCCTTCACTTTAAGTTTAGAAAGTGATATTGCAGGTTTGCGTAAAAAGCGTAGTCAAGTAAATTCATTACTGATGAAAAGTGGAATGGGTAGTTGGGAAGTACATACCAAGGGCATTGGTGCTAAATTATTACTACagATGGGATTTGAACCTGGTAAGGGCTTGGGTAAACAGTTACAAGGAATTAGCGCACCAGTGGAAGCACATCTCAGAAAGGGAAGAGGTGCGATAGGTGCATATGGTCCGGAAAAGGTACCAAAGAttccagaaaaaaagaaagatgatGAGAAGGAAGAAGCAAAAGAATCCAAGACTAAAGTATCCCAATGGCGGAAGGGTGATAACAGCGGCAAGAAAAAAGTCAGATATTGTTACAGAAGCGTGGATCAAGTTTTGGAAGATGGAAAATTGAAGCCCAATAAAAAGATTCCAGTATCTAGCGACATGAGCAGAGTTAAAGTTATCGATATGACAGGGCCAGAGCAGAGAATTCTCAGTGGATATCACGCGATAGCTGGTGGTCAGCAGTGCCCCGATGAGAACGTAATCACAtctgataaaaaatctaaagtgAATTTTGCCTTGCCTGAATTGCAgcacaatttaaatttgcttGTTGATATGTGCGAGCaagatattattcaaaatgatCGGCGAATGAGACATTTGAATGATAGACTAATCACATTAgaagcggaaaaaaaaaatttatcaaaagttGTCAATCAGCATAGTGAATTAATTGATACCTTGGAAAATGTGCTCATGATCGTGGATAGACTGATGAATGAAACAAACGAATTGTCTCTGCAAGAAACTGCGGAggctttcaaaaatttgcaagataattattacgaGGAGTACAAAATGTACGAACTTGGTGAATTGGCCAGCAGTTTTGTAGCGccgaaaataaaagattgccTGCTCAGTTGGAATCCACTGATGCAACCGAAACAACCAATTAAATTGTTCCAACAATGGAAGAGTATTTTAGAAAGTGGAATCAGTACTACGCTTCAGACACAAACGATGCAACCGTATGATCAACTAGTGTGGAATGCATGGATGCCATCGATTAGAGGAGCTATACAACAATGGACGTGTAGGCAGCCTGATCCTCTAATCGAACTGATAGAATATTGGATACCATTGTTACCCAGCTGGatcttagaaaatatattagatttattaGTATTGCCAAAATTGACATTAGAGGTAGAAGAATGGAATCCTCTCACCGACACTGTACCTATTCATACATGGATTCATCCTTGGTTGCCCTTATTACGAAATCGTTTGGACACTTTAATTTATCCAATAATACGCAGAAAACTCGGATCTGCATTAGGCGGTTGGCATCCATCAGACAGATCCGCCAGACTAATGCTGCAACCTTGGGCGGAAGTGTTTGCCAAGGGTGACATGGAAGCGTTTTTAGTCAAGAATATTGTTCCAAAGTTGCAAATAGCTTTGTCCGAATTTGTTATAAACCCGCATCAACAGCACTTGGATCAATGGAACTGGGTGTACGAATGGAAGGAATTGATTCCCGTTCACATTATGGCAGGACTGTTCGACAAGTTCTTTTTCCCGAAGTGGCTACAGGTCTTGGCACTTTGGCTCAATCATTCGCCTAATTATGATCAAGTTACAACCTGGTACATGGGTTGGAAGGGGATGTTAAGCGATAAGTTATTGGCGGAACCCCTGATAAAAGAACACTTCAAGAAAGCATTGGACATGATGAATAGGGCCGGGTCGCAAAGTCATCAGCCCGGCGCAATGGAACAGGTTTCGTATTTAACGAGCTTAGAGAGAACGCAGCCGACTATGTCGCAGATGGCACCGATTGCGCAGCCGAGAATGGAGagACTCGCGGAGGTAGTGCGAACGGCCTCGCAAATTCCGCAAGGTTTCAAGGATCTCGTGCAAAAGAAATGCGAGGAGAGaggtatattatttatgccgATCCCGAACAGATACAAGGAGGCTAAGCAAGTATACAAAGTGGGCAACGTTCAGGCGTACATCGACGGCAGTGTCTTGTTCGTGTGTCACAACGGTACAAATTGGGTGCCGACGCATTTAAACGCCCTGCTGGATATGTCCGAACTTTAg
- Protein Sequence
- MSEDEVESFEITDYDLNNEFNIARPRRKLSKKQQMLGIWADNSDEDELSARPSFKTFNKGPKNYTAPVNFVAGGIQQSGKPKDKEDKEDEEEEEEMRDSQTNLHSDSSSEDEKPNSPKSRSSFTLSLESDIAGLRKKRSQVNSLLMKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKVPKIPEKKKDDEKEEAKESKTKVSQWRKGDNSGKKKVRYCYRSVDQVLEDGKLKPNKKIPVSSDMSRVKVIDMTGPEQRILSGYHAIAGGQQCPDENVITSDKKSKVNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLNDRLITLEAEKKNLSKVVNQHSELIDTLENVLMIVDRLMNETNELSLQETAEAFKNLQDNYYEEYKMYELGELASSFVAPKIKDCLLSWNPLMQPKQPIKLFQQWKSILESGISTTLQTQTMQPYDQLVWNAWMPSIRGAIQQWTCRQPDPLIELIEYWIPLLPSWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIVPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPVHIMAGLFDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLAEPLIKEHFKKALDMMNRAGSQSHQPGAMEQVSYLTSLERTQPTMSQMAPIAQPRMERLAEVVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDGSVLFVCHNGTNWVPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271208; iTF_01269052; iTF_00966025; iTF_00684161; iTF_00360898; iTF_00860386; iTF_00863266; iTF_00084547; iTF_00865315; iTF_00963843; iTF_00024614; iTF_01417702; iTF_00183943; iTF_00866698; iTF_00962506; iTF_00863949; iTF_01169165; iTF_00982286; iTF_01539598; iTF_00861871; iTF_00684784; iTF_00760976; iTF_00861136; iTF_00963184; iTF_01420272; iTF_00183281; iTF_00360209; iTF_00676017; iTF_00983601; iTF_01123057; iTF_00625490; iTF_00088819; iTF_00762547; iTF_00982963; iTF_00087156; iTF_00866004; iTF_00118005; iTF_01419637; iTF_00964470; iTF_00306263; iTF_01255543; iTF_00763224; iTF_00864633; iTF_01424377; iTF_00087994; iTF_01424378; iTF_00961819; iTF_00085372; iTF_01122429; iTF_00862559; iTF_01420928; iTF_01454081; iTF_00216390; iTF_01423654; iTF_01422924; iTF_01421552; iTF_01498216; iTF_01071018; iTF_00217068; iTF_00773805; iTF_00223185; iTF_00231314; iTF_00228662; iTF_00228663; iTF_00228664; iTF_00228665; iTF_00228666; iTF_00391287; iTF_00633624; iTF_01229015; iTF_01523353; iTF_01087195; iTF_00142460; iTF_00141222; iTF_00140583; iTF_00141821; iTF_00393596; iTF_00452572; iTF_01268266; iTF_01269795; iTF_01267559; iTF_01266879; iTF_01270495; iTF_01354606; iTF_01355303; iTF_01077460; iTF_00125921; iTF_00128971; iTF_00129739; iTF_00127451; iTF_00127452; iTF_00868097; iTF_00867394; iTF_00868793; iTF_00128195; iTF_01254790; iTF_00264266; iTF_00264990; iTF_01407277; iTF_01099182; iTF_01408206; iTF_00885103; iTF_00765577; iTF_01228367; iTF_01408207; iTF_00417553; iTF_01476913; iTF_01261827; iTF_00016676; iTF_00015365; iTF_01476167; iTF_00769617; iTF_00014714; iTF_00016032; iTF_00181298; iTF_00181957; iTF_00126709; iTF_01409109; iTF_01477559; iTF_01405691; iTF_01520221; iTF_00109823; iTF_00385312; iTF_01015808; iTF_00280600; iTF_00279959; iTF_00730052; iTF_01245217; iTF_00730730; iTF_00729298;
- 90% Identity
- iTF_01421552;
- 80% Identity
- -