Lnig016613.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius niger
Gene Symbol
tfip11
Assembly
GCA_001045655.1
Location
LBMM01006021.1:4276-9061[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-102 2.5e-98 329.1 16.8 1 275 391 659 391 659 0.98
2 2 0.0033 30 4.1 0.1 243 272 672 701 664 704 0.87

Sequence Information

Coding Sequence
atGTCTGAAGACGAAGTGGAAAGCTTTGAAATTACCGATTATGATTTAGATAACGAATTTAACATAGCTCGTCCCCGACGCAAGCTTTCGAAGAAGCAACAAATGCTAGGAATATGGGCAGATGACAGCGATGAGGATGAATTATCTGCCAGACCATCTTTCAAGACTTATAACAAGGGcccaaaaaattatacagcaCCAGTTAGTTTTGTTGCTGGTGGTATCCAACAAGCAGGGAAACCAAAAGATAAGGAAGATAATGATGacgaagaagatgaagaagagacACGGGAATCTCAAACAAAGCATCACAGTGATTCTAGCTCAGAAGATGGAAGGCCAAATAATTCGAAATCACGTCCATCTTTCTCTTTGAATTTAGACAGCGAAATTGCGGGTCTGCGTAAAAAACGCCATCAAGTTAATCCATTGTTAATGAAAGGTGGAATGGGTAGTTGGGAAGCACACACAAGGGGTATTGgtgctaaattattattacagatGGGATTTGAACCTGGCAAAGGTTTGGGTAAACAACTACAAGGAATAAGCACCCCGGTGGAAGCACATCTCAGAAGGGGAAGAGGTGCGATTGGTGCGTACGGTCCAGAAAAGGTACCAAAAAttccagaaaaaaagaaagatgacgATGGAGAAGAAGCGAAGGAATCCAAATCCAAAGTATCTCAATGGCGGAAGGGCGATAATagcaataagaaaaaagttagATATTGTTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAGTTAAAGCCCAATAGAAAGCTTCCAATGTCTAGTGATATAAGCAGAGTTAAAGTTATCGATATGACAGGGCCAGAGCAAAGAATTCTTAGTGGGTATCACGCGATAGCTGGTGGTCAGCAATGCCCCGACGAGACCGTGACTACGtctgataaaaaatctaaagtgAATTTTGCTCTGCCCGAATTGctgcataatttaaatttactcgTGGATATGTGCGAGCaagatattatacaaaatgatCGACGAATGAGACATTTAAATGACAGAGTGGTTGCTTTAGAAGcggaaaagaagaatttatcgAAAGTCGTGGATCAACATGGCCAACTAATTGATACTTTAGAGAATGTGCTTGTGATTGTGGACAAGTTAATGAACGAGACGAACGAATTGTCTCTCCAAGAAACTGcggaaacttttaaaaatttgcaagacAATTATTATGAGGAGTACAAAATGTACGAACTCGGTGAATTGGCCAGTAGTTTTGTAAtgccaaaaataaaagattgctTACTCAGTTGGAATCCACTAATGCAACCGAAACAACCGATCAAATTATTTGAACAGTGGAAGTGTATTTTGGAAAATGGAACTAGTACTACACTCCAAACACGGACTATGCACCCGTATGATCAATTAGTATGGAACGCGTGGATGCCATCAATTAGAGGAGCCATAGAaCAGTGGACATGTAGGCAGCCTGATCCTCTGATTGAACTAATAGAATATTGGATGCCATTATTGCCCAATTGgatcttagaaaatatattagatttattagttTTGCCAAAATTGACATTGGAAGTGGAGGAATGGAATCCTCTTACAGACACTGTACCCATCCATACATGGATTCATCCTTGGTTGCCATTATTACGAAATCGTTTggatactttaatttatccaATAATACGCAGAAAGCTTGGATCTGCATTAGGAGGTTGGCATCCATCAGATAGATCTGCTAGATTAATGCTGCAACCTTGGGCAGAAGTGTTTGCCAAGGGAGATATGGAAGCGTTTTTagttaaaaacattatacCAAAATTGCAAATAGCCTTATCCGAATTTGTCATAAACCCACATCAACAACATATAGAGCCATGGCATTGGGTGTACGAGTGGAAGGAATTAATCCCTGTTCATATCATGGCAGGACTGCTCGACAAATTCTTCTTTCCAAAGTGGTTGCAAGTTTTGGCACTTTGGCTCAATCACTCACCAAATTACGATCAAATTACAAACTGGTATATGGGTTGGAAAGGCATGTTGAGCGACAAGTTATTGGCGGAACCAGTGATAAAAGagCATTTCAAGAAAGCATTGGACATGATGAATAGGGCCGTCAGCGGATCACAAAATCATCAACCTGGCGCGCTGGAACACGTTTCGTATTTAACGAGCCTAGAGAGAAACCAGCCGACAATGTCGCAAATGGCATCGATCGCACTGCCGAGGATGGAGAGGCTCGCAGAGGCAGTGCGAACAGCCTCACAAATTCCGCAAGGTTTCAAGGATCTTGTACAAAAGAAATGCGAAGAGAgaggtatattatttatgccaATCCCGAATAGATATAAAGAGGCCAAGCAAGTATACAAAGTGGGCAACGTTCAGGCGTATATCGACGGCAATGTCTTGTTTGTATGTCACAATGGTACAAATTGGATGCCGACGCATTTAAATGCCTTGCTAGATATGTCTGAACTTTAA
Protein Sequence
MSEDEVESFEITDYDLDNEFNIARPRRKLSKKQQMLGIWADDSDEDELSARPSFKTYNKGPKNYTAPVSFVAGGIQQAGKPKDKEDNDDEEDEEETRESQTKHHSDSSSEDGRPNNSKSRPSFSLNLDSEIAGLRKKRHQVNPLLMKGGMGSWEAHTRGIGAKLLLQMGFEPGKGLGKQLQGISTPVEAHLRRGRGAIGAYGPEKVPKIPEKKKDDDGEEAKESKSKVSQWRKGDNSNKKKVRYCYRSVDQVLEDGKLKPNRKLPMSSDISRVKVIDMTGPEQRILSGYHAIAGGQQCPDETVTTSDKKSKVNFALPELLHNLNLLVDMCEQDIIQNDRRMRHLNDRVVALEAEKKNLSKVVDQHGQLIDTLENVLVIVDKLMNETNELSLQETAETFKNLQDNYYEEYKMYELGELASSFVMPKIKDCLLSWNPLMQPKQPIKLFEQWKCILENGTSTTLQTRTMHPYDQLVWNAWMPSIRGAIEQWTCRQPDPLIELIEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHIEPWHWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQITNWYMGWKGMLSDKLLAEPVIKEHFKKALDMMNRAVSGSQNHQPGALEHVSYLTSLERNQPTMSQMASIALPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDGNVLFVCHNGTNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_00109823;
80% Identity
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