Ccol003094.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes collaris
Gene Symbol
TFIP11
Assembly
GCA_030068185.1
Location
JASGYR010000077.1:6052040-6055642[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.1e-102 4.9e-98 328.9 15.7 1 275 393 660 393 660 0.99
2 2 0.0032 51 4.1 0.1 244 273 674 703 665 705 0.88

Sequence Information

Coding Sequence
ATGTCGGAAGACGAAGTAGAAAGTTTTGAAATTACCGATTACGATCTTGACAATGAATTTAATATCAATCGTCCTAGACGTAAattaacaaagaaacaacaaatGCTTGGCATTTGGGCAGACGATAGCGATGAAGAAGAATTATCTGCTAGACCATCATTTAAAACTTTTGACAAAGGACCTAAAAACTATACAGCCCCTGTAAATTTTGTAGCAGGTGGCATACAACAAGCTGGGAAACCAAAAGATGAGATAGAGGAAAAAGATGACGATGACAGTGATGAAAATACAAGTAAATTGCAAAGAGAATTTCCAAATAGTTCAAGCTCCGAAGATGAAAGACCAAGTATGGCACCGTTACGTTCATCTTTTTCATTAAACACAGATGGAGATATTGCTGGTTTACGTAAAAAGAAAAGTAAAGTAAATCCGTTACTAATACAAAGTGGAATGGGCAGTTGGGAGGTTCATACAAAAGGCATTGGAGCTAAGCTGTTATTACAGATGGGTTTTGAACCTGGCAAAGGGTTGGGTAAACAATTACAAGGTATAAGCGCACCAGTAGAAGCCCATTTGAGAAAAGGTAGAGGCGCAATTGGTGCTTATGGCCCAGAAAAAGGCCCAAAATTAGCAGATAAAAAAAAGGAAGACGAAATAGAAGAAGGAAAAGATTCAAAAGCTAAATTATCTCAGTGGCGTAAAGGAGATAGTACTGTGGTTAAGAAGAAAGTAAAATATGTCTACCGAAGCGTTGATCAGGTTTTAGAGGATGGAAAACTAAAACCCAGCAAGAAAGTAAGGTCATCTAACGAAATGAGCAGAGTTAAAGTTATAGATATGACTGGCCCTGAACAAAGAATTTTAAGTGGATACCATGCAATTGCTGGAGGTCAACAACGACCAGATGAAAGTGTCGTAGTTACTGATACAAAATCCAAACTTAATTTTGCACTGCCAGAGCTCCAACATAATTTAAACATACTTGTCGACATGTGCGAGCAAGATATTATACAAAATGACAGGCGAACGCGGCATTTGAATGATAGAGTAGTTGCATTAGAAGCAGAgaagaaaaatttgtcaaaagttaTAGACCAACATGGTCAGCTCATTGACACGTTAGAAAACGTACTCGATATTGTAGACAGATTAATGGATGAAACAAATCAGATGTCGTTACAAGAGACTGCAGAAGCTTTCAAAGATTTACAAGATAAATATTATGaggaatataaaatgtatgaaCTTGGTGAATTGGCTAGCAGTTTTGTTGGTCCAAAAATAAAGGAATGTTTGACTAGTTGGAATCCAATAATGCAACCGAAACAACCCattaaattatttgaacaatggAAGAGTATTTTAGAAAGCGGTGCTACGACCCTTCAATCGCGAACTATGCAATCGTACGACCAACTTGTTTGGAATGCGTGGATGCCATCAATTAGAGGAGCCATACAACAGTGGACGTGTAGACAACCAGAGCCGCTCATCGAATTAATCGAACATTGGATGCCATTGCTTCCAGGTTGGATATTAGAAAATATTCTAGATTTATTAATTCTTCCGAAACTTACTTTGGAAGTCGAAGAATGGAATCCCCTCACTGACACGGTACCGATTCACACGTGGATTCATCCGTGGCTGCCATTATTACGTACTCGACTGGATACTTTAATATATCCAATAATACGACGTAAATTAGGTTCTGCATTGGGTGGATGGCATCCATCCGACAGATCTGCTAGACTAATGTTACAACCATGGTCTAATGTCTTTGCAAAAGGAGATATGGAGGCCTTTTTAGTGAAAAATATAATACCAAAATTGCAAATAGCACTTTCAGAATTTGTTATTAATCCACATCAACAACATTTGGATCAGTGGAATTGGGTATATGAATGGAAAGAGTTAATTCCATCTCACATAATGGCAGGATTGCTTGACAAATTTTTCTTCCCCAAATGGCTACAAGTCTTGGCTCTTTGGCTAAACCATTCCCCTAATTACGATCAAGTTACAAATTGGTATATGGGATGGAAAGGCATGCTAAATGAAAAATTACTAGCCGAACCTTTAGTGAAAGaaCACTTCAAGAAAGCATTGGATATGATGAATAGAGCAGTTACAGGACCACAGAGTCATCAACCAGGCGCAATGGAACAAGTTTCATATTTAACAAGCTTGGAAAGGACTCAACCTACCATATCACAGATGCCACCGACCGCACAACCAAGAATGGAGAGACTTGCTGAAGCAGTTCGAACGGCATCGCAAATACCACAAGGTTTTAAAGACCTTGTTCAAAAGAAATGCGAAGAAAGAGGTATTCTGTTCATGCCTATACCAAATCGTTATAGAGAAGCTAAACAAGTTTACAAGGTAGGCAATGTCCAAGCTTACATAGATAGAAATGTTTTATTTGTTTGTCATAATGGCATGAATTGGATGCCGACGCATTTAAATGCTTTATTAGACATGTCTGAACTTTAA
Protein Sequence
MSEDEVESFEITDYDLDNEFNINRPRRKLTKKQQMLGIWADDSDEEELSARPSFKTFDKGPKNYTAPVNFVAGGIQQAGKPKDEIEEKDDDDSDENTSKLQREFPNSSSSEDERPSMAPLRSSFSLNTDGDIAGLRKKKSKVNPLLIQSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKGPKLADKKKEDEIEEGKDSKAKLSQWRKGDSTVVKKKVKYVYRSVDQVLEDGKLKPSKKVRSSNEMSRVKVIDMTGPEQRILSGYHAIAGGQQRPDESVVVTDTKSKLNFALPELQHNLNILVDMCEQDIIQNDRRTRHLNDRVVALEAEKKNLSKVIDQHGQLIDTLENVLDIVDRLMDETNQMSLQETAEAFKDLQDKYYEEYKMYELGELASSFVGPKIKECLTSWNPIMQPKQPIKLFEQWKSILESGATTLQSRTMQSYDQLVWNAWMPSIRGAIQQWTCRQPEPLIELIEHWMPLLPGWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRTRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWSNVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKGMLNEKLLAEPLVKEHFKKALDMMNRAVTGPQSHQPGAMEQVSYLTSLERTQPTISQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYREAKQVYKVGNVQAYIDRNVLFVCHNGMNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_00966025;
80% Identity
iTF_00360898;