Acha002281.1
Basic Information
- Insect
- Acromyrmex charruanus
- Gene Symbol
- tfip11
- Assembly
- GCA_017607545.1
- Location
- JAANIC010002283.1:1845836-1849451[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-102 1.5e-98 328.8 17.6 1 275 384 652 384 652 0.98 2 2 0.012 54 2.3 0.1 245 272 667 694 658 697 0.86
Sequence Information
- Coding Sequence
- ATGTCTGAAGATGAAGTGGAAAGCTTTGAAGTTACTGATTATGATTTGGATAATGAATTTAACATCGCTCGTCCCCGACGCAAACTGACGAAGAAACAACAAATGCTAGGAATATGGGCAGATGATAGTGATGAGGATGAATTATCTGCCAGACCATCTTTTAAGACTTTTAACAAGGGTCCTAAGAATTATACAGCACCAGTTAATTTCGTCGCTGGTGGTATCCAACAAGCAGGACAACCAAAAGAGAAGGAGGCTAAAGATGATGAAGAAGATGATGAAGAGACAAGGGATTCTCAAACAAAGCACACTAGCTCgagatcaaataattcaaaatcacGCCCATCTTTCTCTTTGAATTTGGACAGCGATATTGCAGGTCTGCGTAAAAAGCGCCATCAAGTGAATCCCTTATTGATGAAAAGTGGAATGGGTAGTTGGGAAGTGCATACAAAGGGCATTGGTGCTAAATTATTGCTACAGatggGATTTGAACCTGGTAAAGGCTTAGGTAAACAACTACAAGGAATAAGTGCACCAGTAGAAGCACATCTCAGAAAAGGAAGGGGTGCAATAGGTGCATATGGCCCAGAAAAAACACCAAAGATTcctgagaaaaagaaagatgatGATGGGGAGGAAACAAAAGAATCCAAATCTAAAGTATCTCAATGGCGGAAAGGTGACAGCAACAAGAAAAAAGTCAGATATTGTTATAGAAGTGTAGATCAAGTTTTGGAAGATGGAAAACTGAAACCTAATAAAAAACTTCCAGTATCAAGCGATATGAGTAGAGTTAAAGTTATTGATATGACAGGACCAGAACAAAGAATTCTTAGTGGATATCATGCAATAGCTGGTGGTCAGCAATGTCCTGATGAGACTGTAATTACGTCTGACAAGAAATCTAAAGTGAACTTTGCCCTGCCTGAATTGCagcataatttaaatttacttgtAGATATGTGCGAGCAAGATATCATTCAAAATGATCGACGAATGAGACATTTAAGTGATAGAGTAATTGCTTTAGAagcagaaaaaaagaatttatccAAAGTTATGGATCAACATAGTCAACTTATTGATACTTTGGAAAATGTACTTGTTATTGTAGATAAGTTAATGAATGAAACGAACGTATTGTCGTTGCAAGAAACTGCAGAGgctttcaaaaatttacaaaacaattattatgaaGAGTACAAGATGTACGAACTTGGTGAATTAGCTAGTAGTTTCGTGGCACCGAAAATAAAGGATTGTTTGGTTAATTGGAATCCGTTAATACAACCAAAACAaccgattaaattatttgaacagTGGAAGGATATCTTGGAGAATGGAACTACTACGACTTTACAGACACGGACTATGCAGTCATATGATCAACTAGTATGGAATGCATGGATGCCATCAGTTAGAGGAGCTATAcaacAGTGGACATGTAGGCAGCCTGAGcctttaattgaattaatagaATACTGGATGCCATTATTACCCAATtggattttagaaaatatattagactTACTAGTGTTACCAAAATTAACATTGGAAGTTGAAGAATGGAATCCTCTTACTGATACTGTACCTATTCATACATGGATTCATCCTTGGTTGCCATTATTACgAAATCGTTTAGATACTTTGATTTATCCAATAATACGTAGAAAACTCGGATCTGCATTAGGAGGTTGGCATCCATCAGATAGATCCGCTAGATTAATGTTGCAACCATGGGCAGAAGTATTTGCTAAAGGAGACATGGAAGCATTTTTAGTCAAAAACATTATTCCAAAATTGCAAATAGCCTTATCCGAGTTTGTTATAAATCCACATCAACAGCATTTAGATCAATGGAACTGGGTGTATGAATGGAAAGAATTAATACCTGTTCATATAATGGCAGGATTACTTGACAAATTCTTTTTCCCAAAATGGCTACAAGTTTTAGCACTTTGGCTCAATCATTCGCCTAATTATGATCAAGTAACAACTTGGTACATGGGTTGGAAAGGGATGTTAAATGATAAGTTACTAGCAGAACCAGTAATAAAAGAGCATTTTAAGAAAGCATTGGACATGATGAATAGGGCTGTCAGTGGGCCACAAACTCATCAACCTGGCGCAATAGAACAAGTTTCATATTTAACAAGCTTAGAAAGAACTCAGCCAACAATATCACAGGTGGCACCGATTGCGCAGCCGAGAATGGAGAGACTCGCAGAGGCAGTACGAACAGCTTCACAAATACCGCAGGGTTTCAAGGATTTCGTACAAAAGAAGTGTGAAGAGAgaggtatattatttatgccgATCCCGAATAGATATAAGGAGGCTAAGCAAGTGTACAAAGTGGGCAATGTTCAGGCTTACATTGACAGCAATGTCTTATTTGTATGTCATAATGGTACAAATTGGATGCCAACGCATTTGAATGCCTTGCTGGATATGTCtgaactt
- Protein Sequence
- MSEDEVESFEVTDYDLDNEFNIARPRRKLTKKQQMLGIWADDSDEDELSARPSFKTFNKGPKNYTAPVNFVAGGIQQAGQPKEKEAKDDEEDDEETRDSQTKHTSSRSNNSKSRPSFSLNLDSDIAGLRKKRHQVNPLLMKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKTPKIPEKKKDDDGEETKESKSKVSQWRKGDSNKKKVRYCYRSVDQVLEDGKLKPNKKLPVSSDMSRVKVIDMTGPEQRILSGYHAIAGGQQCPDETVITSDKKSKVNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLSDRVIALEAEKKNLSKVMDQHSQLIDTLENVLVIVDKLMNETNVLSLQETAEAFKNLQNNYYEEYKMYELGELASSFVAPKIKDCLVNWNPLIQPKQPIKLFEQWKDILENGTTTTLQTRTMQSYDQLVWNAWMPSVRGAIQQWTCRQPEPLIELIEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLNDKLLAEPVIKEHFKKALDMMNRAVSGPQTHQPGAIEQVSYLTSLERTQPTISQVAPIAQPRMERLAEAVRTASQIPQGFKDFVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDSNVLFVCHNGTNWMPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00898736;
- 90% Identity
- iTF_01421552;
- 80% Identity
- -