Bson012094.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- tfip11
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000012.1:1939573-1942736[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-103 7.1e-100 334.7 15.2 1 275 392 661 392 661 0.98 2 2 0.0045 17 5.4 0.1 244 273 675 704 666 706 0.88
Sequence Information
- Coding Sequence
- ATGTCAGAAAACGAAGTAGAAAGCTTCGAAATCACGGATTACGATCTCGAGAATGAATTCAATATTAATCGTCCTAGGCGTAAATTATCAAAAAAACAACAAATGCTTGGTGTTTGGGGCGATGATAGCGACGAAGATGAATTATCTGCTAGACCATCGTTTAAGACATTTGATAAAGGACCAAAGAATTATACGACTCCTGTAAATTTTGTAGCAGGAGGTATTCAACAAGCTGGGAAGCCTAAAGAGGAGACAGAGGACAAAGATGACGACGAAAGCGACAATGAGAGCAAATCTCAAAGAGAATTTCCAAATAGCTCAAGTTCTGAAGATGAGAAGCCAAGTTCTGTGCATCAACGTACGTCGTTTTCGTTAAATACAGATGGGGATATTGCAGGTTTACGTAAAAGGAAGCATAAAGTAAACCCCTTATTAATGCAAAGTGGAATGGGAAGTTGGGAAGTCTATACGAAAGGTATCGGTGCCAAGTTGTTGCTACAGATGGGTTTTGAACCTGGAAAAGGATTGGGTAAACAGTTACAAGGTATAAGCGCGCCAGTTGAAGCACATCTGAGGAAAGGTAGAGGTGCGATTGGTGCTTACGGACCAGAAAAAGGTCCTAAAGTTGcggagaagaagaaagacgaagaaatagaagaagGGAAAGATCCCAAAGCTAAGTTATCACAGTGGAGGAAAGGAGATGGAAATACTGCTAAGAGAAAAGTAAATTATGTATATCGAAGCGTTGATCAAGTTTTGGAAGATGGAAAATTGAAACCTAACAAAAAGATAAGAATATCCAACGAGATGAGTAGGGTCAAAGTTATAGATATGACTGGACCGGAACAAAGAATTCTTAGTGGATATCATGCTATAGCTGGAGGTCAACAGCGACCCGACGAAAACGTCGTAGTTACTGATAAAAAGTCCAAAGTTAATTTTGCATTGCCAGAACTTCagcataatttaaatatacttgTGGATATGTGTGAGCAAGATATTATACAAAACGATAGAAGGACACGGCATCTAAGCGATAGAGTAATTGCACTAGAGGCAGAGAAGAAAAACTTGTCTAAAGTTATAGATCAACACGGTCAGTTAAGAGATACGTTAGAAAACGTTCTTGCAATCGTAGACAGATTGATGGATGAAACAAATCAATTAACGTTAGAAGAAACTGCGGACGCTTTTAAAGATTTACAagataaatattacgaggaataTAAAATGTACGAACTGGGTGAATTAGCTAGCAGTTTTGTTGGTCCAAAAATAAAAGATTGTTTAATTAGTTGGAATCCATTGATGCAACCAAAACAATGTATTAAATTATTCGATCAATGGAAAAGTATCTTAGAGAGTggtaccaccaccaccactctTCAAACAAGAACTATGCAACCGTATGATCATCTTGTTTGGAATTCATGGATGCCATCAATCAGAGGTGCTATACAacaaTGGACATGTAGGCAGCCAGAACCACTAATTGAATTAATAGAACATTGGATCCCACTACTTCCAAATTggatattagaaaatattttagatatgcTGGTTCTCCCCAAACTCACTTTGGAAGTAGAAGAATGGAATCCCCTTACTGATACAGTGCCTATTCACACATGGATTCATCCTTGGATACCACTTTtacGAAATCGTTTGGATACTTTAATATATCCAATAATACGACGTAAATTAGGATCCGCATTGGGTGGTTGGCACCCGTCCGACAGATCTGCCAGATTAATGTTACAACCATGGTCTAATGTTTTCGCAAAAGGAGATATGGAAGCCTTCCTAGTGAAAAATATCATCCCAAAATTGCAAATAGCACTTTCAGAATTTGTTATAAATCCCCACCAGCAACATTTAGATCAATGGAACTGGGTATACGAATGGAAGGACTTACTTCCATCTCATATAATGGCAGGCCTGTTGGATAAATTCTTTTTCCCTAAATGGTTACAAGTTTTGGCCTTGTGGCTAAATCATTCTCCTAACTATGATCAAGTTACAAATTGGTATATGGGATGGAAAAGTATGTTGAGTGAAAAAATATTGGCCGAGCCGTTGGTGAAAGAACATTTCAAAAAAGCATTAGACATAATGCATAGAGCAGCTTCCGTGCCACAGAGTCATCAACCGGGTGCAATGGAACAAGTTTCCTATTTAACGAGCTTAGAAAGAAGTCAACCTACTATGTCACAAATGCCTTCAACAGCTCAACCAAGAATGGAGAGACTTGCCGAAGCAGTTAGAACAGCATCGCAAATACCTCAGGGTTTCAAAGACCTTGTACAAAAGAAGTGCGAGGACAATGGTATATTGTTTATGCCAATACCAAATCGGTACAGGGAAGCAAAGCAAGTTTATAAAGTTGGTAATGTCCAAGCTTATATAGATGGAAATGTTTTATTCGTTTGTCATAATGGCATGAATTGGATGCCAACACATTTAAATGCTTTACTAGACATGTCTGAACTGTAG
- Protein Sequence
- MSENEVESFEITDYDLENEFNINRPRRKLSKKQQMLGVWGDDSDEDELSARPSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKEETEDKDDDESDNESKSQREFPNSSSSEDEKPSSVHQRTSFSLNTDGDIAGLRKRKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKGPKVAEKKKDEEIEEGKDPKAKLSQWRKGDGNTAKRKVNYVYRSVDQVLEDGKLKPNKKIRISNEMSRVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLSDRVIALEAEKKNLSKVIDQHGQLRDTLENVLAIVDRLMDETNQLTLEETADAFKDLQDKYYEEYKMYELGELASSFVGPKIKDCLISWNPLMQPKQCIKLFDQWKSILESGTTTTTLQTRTMQPYDHLVWNSWMPSIRGAIQQWTCRQPEPLIELIEHWIPLLPNWILENILDMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWIPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWSNVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKDLLPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKSMLSEKILAEPLVKEHFKKALDIMHRAASVPQSHQPGAMEQVSYLTSLERSQPTMSQMPSTAQPRMERLAEAVRTASQIPQGFKDLVQKKCEDNGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGMNWMPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00898736;
- 90% Identity
- iTF_00118005;
- 80% Identity
- iTF_00228665;