Pcoc021095.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex concolor
Gene Symbol
tfip11
Assembly
GCA_014839585.1
Location
QVOB01006547.1:2538-6573[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.4e-99 8.8e-95 317.8 16.2 1 275 392 660 392 660 0.99
2 2 0.011 1.3e+02 2.3 0.1 245 272 675 702 666 705 0.85

Sequence Information

Coding Sequence
ATGTCCGAAGACGAAATGGAAAGCTTTGAAATTACTGACTATGACTTAGATCATGAATTCAACCCATCCCGTCCTCGACATAAACTTTCTAAGAGACAACAAATGCTAGGAATATGGGCTGATGATAGCGACGAAGATGATCTATCTGCAAGACCATCCTTTAAAACTTACAACAAAGGTCCGAAGAATTATACAGCACCAGTTAATTTTGTTGCTGGTGGTATTCAACAAGCAGGTAAACCAAAAGAAGAAGATAAGAAAGATGAAGAAGAAAGAGAAGAAGAAGAAGAGGCAGGAGAATCCCAAACAAAATATCAAAGTAGTTCAAGTTCGGAAGATGAAAAGCCAAATAGTTCATCGCGACCATCTTTCTCTTTAAATTTAGACAGTGATATTGCAGGTCTACGCAAAAGACGTAATCAAGTAAATCCACTATTGATGAAAAGTGGCATGGGGAGTTGGGAGATTCATACAAAGGGTATTGGTGCAAAACTGTTATTACAGATGGGTTTTGAACCTGGTAAAGGTTTAGGTAAACAATTGCAAGGAATAAGTACGCCCGTGCAAGCACATCTTAGAAAAGGAAGAGGTGCAATAGGTGCATACGGTCCAGAAAAAATACCAAAACTTTTAGAGAAAAAGGAAAGTAACGAAGCGGAAGAACCATCGGAATCTAAATCCAAATTATCACAATGGAGAAAGAGTGATAGCAATAAGAAAAAAGTTAGATACATTTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAAGTAAAGCCTAATAGAAAACTTCCAGTTTCTAGTGATATGAGCAAAGTCAAAGTTATCGATATGACAGGACCAGAACAGAGAATTCTTAGTGGATATCATGCGATATCTGGTGCTCAGCAGTGTTCAGATGAGACTGTGATCACATCTGATAAAGAATCTAAAGTAAATTTTGCTCTGCCCGAATTACAACATAATTTAAATTTACTCGTGGATATGTGCGAACAAGATATTATTCAAAACGACCGACTGATAAGACATTTAAATGATAGAAAGATTGCTTTAGAAGCAGAAAAAAAGAATCTATTTAAAGTTCTCGATCACCACAGTCAACAAATTGAGACTTTGGAGAACATGCTTACGATTGTCGATAAATTACTGTCGAACACGACAAATGAACTGTCTTTACAAGAGATTGCCGAGGCGTTTAAGCAATTGCAAGAAAATTATTACGAAGAGTACAGAATATACGAACTTGGTGAATTGGCAAGCAGTTTTATAGCACCAAAACTAAAAGATTATTTGCTCAGTTGGAATCCATTAATGCAACCAAAAGAACCGATTAACTTATTTGTAACTTGGAAGGATGTTTTAGAGAAAGGAACTGGTACGACTCTTCAAATACAAACTATGCAGCCATACGATCAAGTAGTATGGAATGCGTGGATGCCATCAATTAGAGGAGCTATACAGCAATGGACGTGCAGACAACCTGATCCTCTGATTGAATTACTAGAACACTGGGTACCATTATTGCCTACTTGGATTTTAGAAAATATATTAGATCTATTAATCTTACCAAAATTGACATTAGAAGTAGAGGAATGGAATCCTCTTACCGATACCGTACCTATTCACACGTGGATTCATCCTTGGTTGCCGTTATTACGAAATCGTTTGGATACCTTAATTTATCCAATAATACGCAGAAAACTTGGATCTGCATTAGGAGGCTGGCATCCATCAGACAGATCCGCTAGATTAATGCTTCAACCTTGGGCGGAGGTATTTACCAAAGGAGACATGGAAGCATTTTTAGTCAAGAATATTCTTCCTAAATTACAAATAGCATTATCCGAGTTTGTTATAAATCCGCACGAGCAACACTTGGATCAATGGAATTGGGTTTACGAGTGGAAAGAATTGATTCCTGTTCATATAACGGCAGGTCTACTCGACAAATTCTTTTTCCCAAAGTGGTTACAAGTCTTGGCACTTTGGTTGAATCATTCACCTAATTACGATCAAGTTACAACCTGGTACATGGGTTGGAAAGGAATGTTAAGTGATAAATTATTAGGAGAACCAATAATAAAAGAACATTTCAAGAAAGCATTAGATATGATGAATAGGGCTGTCAGCGGGCCACAAAGTCATCAACCCGGCGCACTAGAACAAGTTTCGTATTTGACAAGCTTAGAGAGAACTCAGCCGACAATGCCGCAAATAACACCTATAGCACAACCAAGAATGGAGAGACTTGCAGAAGCAGTACGAACAGCCTCACAAATCCCACAAGGTTTCAAAGATCTTGTACAAAAGAAATGCGAGGAGAGGGGTATATTGTTTATGCCGATCCTGAACAGATACAAAGAAGGCAAGCAAGTATATAAAGTAGGCAATGTTCAAGCATACATCGATGGCAACGTCGTGTTTGTATGTCACAATGGTACAAATTGGATGCCAACACATTTAAATGCTTTGCTCGATATGTCCGAGCTTTAA
Protein Sequence
MSEDEMESFEITDYDLDHEFNPSRPRHKLSKRQQMLGIWADDSDEDDLSARPSFKTYNKGPKNYTAPVNFVAGGIQQAGKPKEEDKKDEEEREEEEEAGESQTKYQSSSSSEDEKPNSSSRPSFSLNLDSDIAGLRKRRNQVNPLLMKSGMGSWEIHTKGIGAKLLLQMGFEPGKGLGKQLQGISTPVQAHLRKGRGAIGAYGPEKIPKLLEKKESNEAEEPSESKSKLSQWRKSDSNKKKVRYIYRSVDQVLEDGKVKPNRKLPVSSDMSKVKVIDMTGPEQRILSGYHAISGAQQCSDETVITSDKESKVNFALPELQHNLNLLVDMCEQDIIQNDRLIRHLNDRKIALEAEKKNLFKVLDHHSQQIETLENMLTIVDKLLSNTTNELSLQEIAEAFKQLQENYYEEYRIYELGELASSFIAPKLKDYLLSWNPLMQPKEPINLFVTWKDVLEKGTGTTLQIQTMQPYDQVVWNAWMPSIRGAIQQWTCRQPDPLIELLEHWVPLLPTWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFTKGDMEAFLVKNILPKLQIALSEFVINPHEQHLDQWNWVYEWKELIPVHITAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLGEPIIKEHFKKALDMMNRAVSGPQSHQPGALEQVSYLTSLERTQPTMPQITPIAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPILNRYKEGKQVYKVGNVQAYIDGNVVFVCHNGTNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01269795; iTF_01267559; iTF_01271208; iTF_01268266; iTF_01269052; iTF_01270495;
80% Identity
-